View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_14 (Length: 250)
Name: NF3170_low_14
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 3670661 - 3670517
Alignment:
| Q |
1 |
tcatcaaatcggtgtaacaagatctcgaccgttggattgagttgcacctcaaatccaatggttcaaaattttatgcaccgaccggaggactacaaaggat |
100 |
Q |
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| T |
3670661 |
tcatcaaatcggtgtagcaagatctcgaccgttggattgagttgcacctcaaatccaatggttcgaaattttatgcaccaactggaggactacagaggat |
3670562 |
T |
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| Q |
101 |
ccaagctaacgagtaacgttctaattccaaattaaatgttcttca |
145 |
Q |
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| T |
3670561 |
ccaagctgacgagtaacgttctaattccaaattaaatgttcttca |
3670517 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 3670481 - 3670391
Alignment:
| Q |
149 |
gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttttagaattcat---catgtccagctgaaaatgttcttgat |
236 |
Q |
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| T |
3670481 |
gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttctagaattcatcaacatgtccagctgaaaatgttcttgat |
3670391 |
T |
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