View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3170_low_2 (Length: 603)

Name: NF3170_low_2
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3170_low_2
NF3170_low_2
[»] chr3 (1 HSPs)
chr3 (18-592)||(31041320-31041904)
[»] chr1 (3 HSPs)
chr1 (192-287)||(6556605-6556700)
chr1 (204-289)||(4949036-4949121)
chr1 (260-289)||(48466041-48466070)
[»] chr2 (2 HSPs)
chr2 (249-290)||(39616012-39616053)
chr2 (192-290)||(7335729-7335827)
[»] chr4 (1 HSPs)
chr4 (229-289)||(181723-181783)
[»] chr8 (2 HSPs)
chr8 (228-294)||(34296066-34296130)
chr8 (218-290)||(32659793-32659865)
[»] chr6 (1 HSPs)
chr6 (431-471)||(31768561-31768601)


Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 31041904 - 31041320
Alignment:
Q  18 atatatacatattcaagttcctaaaactaagttatcaactctttatgtggtagatatttaagcacaatttcatatgacaaagtaaacccccaaacgtgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041904 atatatacatattcaagttcctaaaactaagttatcaactcttcatgcggtagatatttaagcacaatttcatatgacaaagtaaacccccaaacgtgtc 31041805  T
Q  118 tctgattttgtagggtgttcttgaatatgtcattgtattataagttatttnnnnnnngtctctgatttttatgctttaatcatatcagtccttcggacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  31041804 tctgattttgtagggtgttcttgaatatgtcattgtattataagttatttaaaaaaagtctctgatttttatgctttaatcatatcagtccttcggacaa 31041705  T
Q  218 tatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataatgactgatttagaataagtggttacac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041704 tatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataatgactgatttagaataagtggttacac 31041605  T
Q  318 atatggagcagtttaatagtacactagagttgaagacctatcaaaaagaatacactatcaatttgatccctggatc-------gtcaccctctctcagct 410  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  31041604 atatggaccagtttaatagtacactagagttgaagacctatcaaaaagaatacactatcaatttgatccctggatcgtcattcgtcaccctctctcagct 31041505  T
Q  411 cctcaactattaaatcatgctaagtagtccataaactattataaatgcatcaagttagtccctcaattctcttaaacaatagagaatggtggctcaagga 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  31041504 cctcaactattaaatcatgctaagtagtccataaactattataaatgcatcaagttagtccctcaattctcttaaacaatagggaatggttgctcaagga 31041405  T
Q  511 ctatttttatggtct---taataatagtttaggtgctacttggtatatttatacagttcgaagaccaaatcgatggtttattcat 592  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041404 ctatttttatggtcttaataataatagtttaggtgctacttggtatatttatacagttcgaagaccaaatcgatggtttattcat 31041320  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 6556700 - 6556605
Alignment:
Q  192 tttaatcatatcagtccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaata 287  Q
    |||| |||||| |||| ||| || | |||| |||| ||||||||||||| ||| |  ||||||||| ||| || ||||||||||||||||||||||    
T  6556700 tttactcatattagtcattccgagagtatgctagagactaaattgatagtaagcggttaaatataaaaaccaagttgatagtaagttgttaaaata 6556605  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 4949121 - 4949036
Alignment:
Q  204 agtccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatata 289  Q
    |||||||| |||||||||||||| |||||||||| || ||| |  ||||||||   || ||||| ||||||| |||||||||||||    
T  4949121 agtccttctgacaatatgttagagactaaattgagagtaagtggttaaatatagagacgaaattaatagtaaattgttaaaatata 4949036  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 289
Target Start/End: Complemental strand, 48466070 - 48466041
Alignment:
Q  260 actaaattgatagtaagttgttaaaatata 289  Q
    ||||||||||||||||||||||||||||||    
T  48466070 actaaattgatagtaagttgttaaaatata 48466041  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 39616053 - 39616012
Alignment:
Q  249 taaatataataactaaattgatagtaagttgttaaaatataa 290  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  39616053 taaatataataaccaaattgatagtaaattgttaaaatataa 39616012  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 290
Target Start/End: Complemental strand, 7335827 - 7335729
Alignment:
Q  192 tttaatcatatcagtccttcggacaatatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataa 290  Q
    ||||||| ||| |||| ||| ||||| ||||||  |||||||||| ||| |||    ||||||||| ||| ||||||||| || |||||||||||||||    
T  7335827 tttaatcctattagtctttctgacaacatgttatgaactaaattgttagcaagttgttaaatataagaaccaaattgataataggttgttaaaatataa 7335729  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 181723 - 181783
Alignment:
Q  229 ctaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatata 289  Q
    |||||||||||| ||| || ||||||||  ||  |||||||||||||||||||||||||||    
T  181723 ctaaattgatagaaagtgattaaatataggaatcaaattgatagtaagttgttaaaatata 181783  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 34296130 - 34296066
Alignment:
Q  228 actaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataatgac 294  Q
    ||||||||||||| |||||  ||||| ||| ||  ||||||||||||||||||||||||||| ||||    
T  34296130 actaaattgatagtaaggg--taaatgtaagaatcaaattgatagtaagttgttaaaatatagtgac 34296066  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 32659865 - 32659793
Alignment:
Q  218 tatgttagaaactaaattgataggaagggactaaatataataactaaattgatagtaagttgttaaaatataa 290  Q
    |||||||| ||||||||||||||  ||||  |||| |||   || || |||||||||||||||||||||||||    
T  32659865 tatgttaggaactaaattgatagtgaggggttaaacatagagaccaagttgatagtaagttgttaaaatataa 32659793  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 31768601 - 31768561
Alignment:
Q  431 taagtagtccataaactattataaatgcatcaagttagtcc 471  Q
    |||||||||| |||||||| |||||| ||||||||||||||    
T  31768601 taagtagtccttaaactatcataaatccatcaagttagtcc 31768561  T

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