View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_3 (Length: 575)
Name: NF3170_low_3
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 206 - 565
Target Start/End: Complemental strand, 12322823 - 12322465
Alignment:
| Q |
206 |
ccattcgtccgtgacacacacaaaataaaaacacccatcccgtgaaatattctcatcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatg |
305 |
Q |
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| T |
12322823 |
ccattcgtccgtgacacacacaaaataaaaacacc-atcccgtgaaatattctcatcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatg |
12322725 |
T |
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| Q |
306 |
tgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgcagaatcttcttatagctgcatgtgaaaatattgcctaagaattgaaac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12322724 |
tgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgcagaatcttcttatagctgcatgtgaaaatattgcctaagaattgaaac |
12322625 |
T |
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| Q |
406 |
tatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttatagcttataatcacaaacacttttgtcacctcagaacacnnnnnnngtg |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12322624 |
tatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttatagcttataatcacaaacacttttgtcacctcagaacacaaaaaaagtg |
12322525 |
T |
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| Q |
506 |
cactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttctttctctg |
565 |
Q |
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| T |
12322524 |
cactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttctttctctg |
12322465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 12323020 - 12322908
Alignment:
| Q |
9 |
tgttattggtcttacgattaaaatcaaattatgaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcattctacg |
108 |
Q |
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| T |
12323020 |
tgttattggtcttacgattgaaatcggattgtaaatatttaaagatcagaagtgaaataaaaactattctaacatatcatatggttgatatcattctacc |
12322921 |
T |
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| Q |
109 |
gtcactatttgac |
121 |
Q |
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||||||| ||||| |
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| T |
12322920 |
gtcactacttgac |
12322908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 25912393 - 25912523
Alignment:
| Q |
9 |
tgttattggtcttacgattaaaatcaaattatgaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcattctacg |
108 |
Q |
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||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
25912393 |
tgttattggtcttacgattgaaatcggattgtgaatatttaaagatcaaaagtgaaataaaaactattctaacaaattagacggttgatatcattctaca |
25912492 |
T |
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| Q |
109 |
gtcactatttgacagcagagaatcattttcc |
139 |
Q |
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| T |
25912493 |
gtcactatttgactattgagaatcattttcc |
25912523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 16495335 - 16495238
Alignment:
| Q |
41 |
gaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcattctacggtcactatttgacagcagagaatcattttc |
138 |
Q |
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|||| ||||||||||| || ||||||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
16495335 |
gaatgtttaaagatcagaagtgaaataaaaactgttctaatagatcagacggctgatatcattctagagtcactatttgactgcagagaatcattttc |
16495238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 11464665 - 11464571
Alignment:
| Q |
9 |
tgttattggtcttacgattaaaatcaaattatgaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatatcatt |
103 |
Q |
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|||| |||| ||||||||| ||||| |||| ||| ||||||||||||| || ||||||||||| | ||||| || |||||| || |||||||||| |
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| T |
11464665 |
tgttgttggccttacgattgaaatcgaattgtgattatttaaagatcagaagtgaaataaaaattgttctatcaaatcagacggctgatatcatt |
11464571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 5435011 - 5434921
Alignment:
| Q |
9 |
tgttattggtcttacgattaaaatcaaattatgaatatttaaagatcaaaaatgaaataaaaactattctaacagatcagatggttgatat |
99 |
Q |
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|||||||| |||||||||| ||||| ||| ||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| |
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| T |
5435011 |
tgttattgatcttacgattgaaatcggattgtgaatatttaaagataggaagtgaaataaaaactattctaatagatcagacggttgatat |
5434921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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