View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_4 (Length: 566)
Name: NF3170_low_4
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_4 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 38424381 - 38424153
Alignment:
| Q |
17 |
caaaagaggcgaacactgaaaacaaacgaaaaagatttggtggcatggcaggttgccaccctataaccccgtaaaaatattataagacccttgaagagaa |
116 |
Q |
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| T |
38424381 |
caaaagaggcgaacactgaaaacaaacgaaaaagatttggtggcatggcaggttgccaccctataaccccgtaaaaatattataagacccttgaagagaa |
38424282 |
T |
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| Q |
117 |
aactcacaagtaacagactcctgcaagataactcaaacgattcgtattacgttacgtacgtgaagaaatataatgagttcggagagaggtggtttaagct |
216 |
Q |
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| T |
38424281 |
aactcacaagtaacagactcctgcaagataactcaaacgattcgtattacgttacgtacgtgaagaaatataatgagttcggagagaggtggtttaagct |
38424182 |
T |
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| Q |
217 |
caactttcacatgaacaatcctttaaaat |
245 |
Q |
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| T |
38424181 |
caactttcacatgaacaatcctttaaaat |
38424153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 359 - 526
Target Start/End: Complemental strand, 38424042 - 38423875
Alignment:
| Q |
359 |
cccttctttttcgatcttgatgcaatgctcattttatttaaattgaaagattgattttgatacggtgcaaatcaaattattgactttgatattctcaaca |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38424042 |
cccttctttttcgatcttgatgcaatgctcattttatttaaattgaaagattgattttgatacggtgcaaatcaaattattgactttgacattctcaaca |
38423943 |
T |
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| Q |
459 |
ttataggtggagacataagtattctgcacacttgaatatagtcatatttattaacctctatgttgtga |
526 |
Q |
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| T |
38423942 |
ttataggtggagacataagtattctgcacacttgaatatagtcatatttattaacctctatgttgtga |
38423875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Complemental strand, 32778823 - 32778782
Alignment:
| Q |
466 |
tggagacataagtattctgcacacttgaatatagtcatattt |
507 |
Q |
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| T |
32778823 |
tggagacatgagtattctggagacttgaatatagtcatattt |
32778782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 21240 - 21280
Alignment:
| Q |
467 |
ggagacataagtattctgcacacttgaatatagtcatattt |
507 |
Q |
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| T |
21240 |
ggagacatgagtattctggagacttgaatatagtcatattt |
21280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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