View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_5 (Length: 522)
Name: NF3170_low_5
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 3621450 - 3621942
Alignment:
| Q |
19 |
aattcatcgttaacacgtagaattatatagtcttagaaggatagtttgcattagacctattcaacgatattacggaaaaatgtagaaagtctatttgttg |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3621450 |
aatttatcgttaacacgtagaattatatagtcttagaaggatagtttgcattagacctattcaacgatattacagaaaaatgtagaaagtctatttgttg |
3621549 |
T |
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| Q |
119 |
tcgatgtctttctatatgaaatgctgaaaacacagtagtataaatggaatttgcttcataccagtactttcacattcacataagtttcaacatgttccca |
218 |
Q |
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| T |
3621550 |
tcgatgtctttctatatgaaatgctgaaaacacagtagtataaatggaatttgcttcataccagtactttcacattcacataagtttcaacgtgttccca |
3621649 |
T |
|
| Q |
219 |
-ttattgaaccattttatatacaacccgaatttctaatcaagatgaacaa---gcaaaagaagctaattctctgttgatggtgatgtaggttgggaaggt |
314 |
Q |
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| T |
3621650 |
attattgaaccattttatatacaacccgaatttctaatcaagatgaacaaaaagcaaaagaagctaattctctgttgatggtgatgtaggttgggaaggt |
3621749 |
T |
|
| Q |
315 |
gagtatggaatggttagcagaggagaagacaaaagtagtaggtacatatccaccacgtcgtaagcagggttggacaggctatgttgaaaaggatactgct |
414 |
Q |
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| T |
3621750 |
gagtatggaatggttagcagaggagaagacaaaagtagtaggtacatatccaccacgtcgtaagcagggttggacaggctatgttgaaaaggatactgct |
3621849 |
T |
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| Q |
415 |
ggacaaacaaatatatattcagtcgaggttagaatttttcttttattaaggaattaaagttgtgcttgtttcataatttgttgttcctttgat |
507 |
Q |
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| T |
3621850 |
ggacaaacaaatatatattcagtcgaggttagaatttttcttttattaaggaattaaagttgtgcttgtttcataatttgttgttcctttgat |
3621942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 394 - 507
Target Start/End: Complemental strand, 23209644 - 23209530
Alignment:
| Q |
394 |
tatgttgaaaaggatactgctggacaaacaaatatatattcagtcgaggttagaattttt-cttttattaaggaattaaagttgtgcttgtttcataatt |
492 |
Q |
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||||||||||||||||||| |||||| |||||| || ||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
23209644 |
tatgttgaaaaggatactggtggacacacaaatgtaaatttagtcgaggttagaattttttcttttattaaggaattaaagttgttcttgtttcataatt |
23209545 |
T |
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| Q |
493 |
tgttgttcctttgat |
507 |
Q |
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|||| || ||||||| |
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| T |
23209544 |
tgttatttctttgat |
23209530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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