View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_7 (Length: 445)
Name: NF3170_low_7
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_7 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 4066072 - 4065650
Alignment:
| Q |
11 |
cagagagccggtatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttg |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4066072 |
cagagagccggtatgagttatcatgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttg |
4065973 |
T |
|
| Q |
111 |
ctaaatcgagtaatgtctacctacaagttgagggaggtctagtctctcaacttgagaacctccagaagaatggtgtggcatatgatgctaatgacacagg |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
4065972 |
ctaaatcgagtaatgtctacctacaagttgagagaggtctagtctctcaacttgagaacctccagaagaatgctgtggcatatgatgctaatgacagagg |
4065873 |
T |
|
| Q |
211 |
tacagaagtgttgagaaggattcttggctttgatttatctattatgccagataagattcatagagaactgggaaagagctccacaattctgtatgaatat |
310 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4065872 |
tacagaagtgttgagaaggaatcttggctttgatttatctattatgccagataagattcatagagaactgggaaagagctccacaattctgaatgaatat |
4065773 |
T |
|
| Q |
311 |
tcgatcaaagggtacaatgataccgaacaatttgatttaggcataacatggaagtatccagttgtttggtcctcctcacatgcacctttctatgccagta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065772 |
tcgatcaaagggtacaatgataccgaacaatttgatttaggcataacatggaagtatccagttgtttggtcctcctcacatgcacctttctatgccagta |
4065673 |
T |
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| Q |
411 |
gatttttaatgggaagtggaaat |
433 |
Q |
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| T |
4065672 |
gatttttaatgggaagtggaaat |
4065650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 4060899 - 4060478
Alignment:
| Q |
11 |
cagagagccggtatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttg |
110 |
Q |
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|||||||| ||| |||| | || ||||||||||||||||||||||||||||||| | |||||||||||||||| |||| | ||||| || |||||||||| |
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| T |
4060899 |
cagagagctggtttgagctctcccgatgaaataaagattcaaccaagctggtctctgagctcaatatttggacgaaaaatcaatggtaggtgtgttcttg |
4060800 |
T |
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| Q |
111 |
ctaaatcgagtaatgtctacctacaagttgagggaggtctagtctctcaacttgagaacctccagaagaatggtgtggcatatgatgctaatgacacagg |
210 |
Q |
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|||| ||||||||||||||||| ||||| ||| ||| ||||||| |||||||||||| |||||||||||| || ||||||| ||||||||||||| | |
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| T |
4060799 |
ctaagtcgagtaatgtctaccttcaagtggagagagatctagtcaatcaacttgagaatctccagaagaatactgctgcatatgctgctaatgacacaag |
4060700 |
T |
|
| Q |
211 |
tacagaagtgttgagaaggattcttggctttgatttatctattatgccagataagattcatagagaactgggaaagagctccacaattctgtatgaatat |
310 |
Q |
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|| ||| || |||||||||| ||||| |||||| |||||| || ||| || | | ||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
4060699 |
tatagacgttttgagaaggaatcttgtctttgaagtatctaatacgccggacagggttcatagagaacttgaaaagagctcatcaattctgtatgaatat |
4060600 |
T |
|
| Q |
311 |
tcgatcaaagggtacaatgataccgaacaatttgatttaggcataacatggaagtatccagttgtttggtcctcctcacatgcacctttctatgccagta |
410 |
Q |
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|| ||||||| |||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4060599 |
tcaatcaaagaatacaatgacgctgaacaatttgatttaagcttaacatggaagtatccagttgtttggtcctcctcacatgcacctttgtatgccagta |
4060500 |
T |
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| Q |
411 |
gatttttaatgggaagtggaaa |
432 |
Q |
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||||||||||||| |||||||| |
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| T |
4060499 |
gatttttaatgggcagtggaaa |
4060478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 21286131 - 21286246
Alignment:
| Q |
11 |
cagagagccggtatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttg |
110 |
Q |
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|||||||| |||||||| | || ||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||| | ||||| | |||||||||| |
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| T |
21286131 |
cagagagctggtatgagctctcccgatgaaataaagattcaacctagctgctctctgagctcaatatttggatgaaaaatcaatggtaagtgtgttcttg |
21286230 |
T |
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| Q |
111 |
ctaaatcgagtaatgt |
126 |
Q |
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|||| || |||||||| |
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| T |
21286231 |
ctaagtcaagtaatgt |
21286246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 34746 - 34687
Alignment:
| Q |
355 |
aacatggaagtatccagttgtttggtcctcc-----tcacatgcacctttctatgccagt |
409 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
34746 |
aacatggaagtatccagttgtttggtcctcctcacgtcacatgcacctttctatggcagt |
34687 |
T |
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