View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_8 (Length: 436)
Name: NF3170_low_8
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 270 - 424
Target Start/End: Original strand, 30501692 - 30501868
Alignment:
| Q |
270 |
ctacaaatcaacttcatttttgagaggacaaatcaactttctttattcaactaatgtagtcaaatgaattatgtatatgtagagacggagttagta---- |
365 |
Q |
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| T |
30501692 |
ctacaaatcaacttcatttttgagaggacaaatcaactttctttattcaactaatgtagtcaaatgaattatgtatatgtagagacggagttagtatacc |
30501791 |
T |
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| Q |
366 |
------------------cactagtaggtagagtgagatttgaaatgtctctaatatggatggcataacctaactga |
424 |
Q |
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| T |
30501792 |
attcattcaatggacattcactagtaggtagagtgagatttgaaatgtctctaatatggatggcataacctaactga |
30501868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 30501471 - 30501634
Alignment:
| Q |
49 |
atgtgcccttttagcatttcttcactaaactatcgttgattcttnnnnnnnta-ttaattgttttacctattatttataggtgtatccaatatatcttct |
147 |
Q |
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| T |
30501471 |
atgtgcccgtttagcatttcttcactgaactatcattgattcttaaaaaaataattaattgttttacctattatttataggtgtgtccaatatatcttct |
30501570 |
T |
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| Q |
148 |
tnnnnnnnnggtgggtccaatattgacctctaaaaaatgatctaaaggtataattaaggggttc |
211 |
Q |
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| T |
30501571 |
taaaaaaaaggtgggtccaatattgacctctaaaaaatgatctaaaggtataattaaggggttc |
30501634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30500643 - 30500691
Alignment:
| Q |
1 |
aattttcatcaattttctgtgtccgtttagcatttctgtttagttttta |
49 |
Q |
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| T |
30500643 |
aattttcatcaattttccgtgtccttttagcatttctgtttagttttta |
30500691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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