View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_9 (Length: 352)
Name: NF3170_low_9
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 48635704 - 48636012
Alignment:
| Q |
11 |
caaaggtgagcataaaaataggaacagaacagtgatcaaggtggatataagattttgttcattcttcctttaattacattctctttatgaccgtcgacaa |
110 |
Q |
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| T |
48635704 |
caaaggtgagcataaaaataggaacagaacagtgatcaaggtggatataagattttgttcattcttcctttaattacattctctttatgaccgtcgacaa |
48635803 |
T |
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| Q |
111 |
agatcaatcaggatacaattgtttattttttaa-gggttgaacatcgaagttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggct |
209 |
Q |
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| T |
48635804 |
agatcaatcaggatacaattgtttattttttaaggggttgaacatcgaagttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggct |
48635903 |
T |
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| Q |
210 |
tgatttcattcattcattcataaacaatgcattcagtgtacgtacctcctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagt |
309 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48635904 |
tgatttcattcattcattcataaacaatgcattcatt----gtacctcctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagt |
48635999 |
T |
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| Q |
310 |
acagttttagcaa |
322 |
Q |
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| T |
48636000 |
acagttttagcaa |
48636012 |
T |
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