View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3172_high_3 (Length: 368)
Name: NF3172_high_3
Description: NF3172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3172_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 182440 - 182797
Alignment:
| Q |
1 |
tatcatattcatagtgatcacatttaatgaaaaacaactctagagagatgagtaaggaggtgacaacaccattgataagaaagaatgat---gagattga |
97 |
Q |
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| T |
182440 |
tatcatattcatagtgatcacatttaatgaaaaacaactctagagagatgagtaaggaggtgacaacaccattgataagaaagagtgatcatgagattga |
182539 |
T |
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| Q |
98 |
gagtacatttgttcaagagttgaagaaagtgagtttcgtggcagctccaatggtagctgtaactgtttcacaatatcttcttcaagtggtttctcttatg |
197 |
Q |
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| T |
182540 |
gagtacatttgttcaagagttgaagaaagtgagtttcgttgcagctccaatggtagctgtaactgtttcacaatatcttcttcaagtggtttctcttatg |
182639 |
T |
|
| Q |
198 |
atggttggacatcttggtatacttgtttcattctctggtgtttccattgccatgtcttttgctgaagttactggctttagtgtccttgtatgttcttctt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182640 |
atggttggacatcttggtatacttgtttcattctctggtgtttccattgccatgtcttttgctgaagttactggctttagtgtccttgtatgttcttctt |
182739 |
T |
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| Q |
298 |
aactctttctttccttttcttggattcaactatc----aatacaactagtatatatgc |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
182740 |
aactctttctttccttttcttggattcaactatcaatgaatacaactagtatatatgc |
182797 |
T |
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