View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3172_low_2 (Length: 421)

Name: NF3172_low_2
Description: NF3172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3172_low_2
NF3172_low_2
[»] chr3 (11 HSPs)
chr3 (1-130)||(17943851-17943980)
chr3 (227-405)||(17944103-17944282)
chr3 (33-99)||(19466264-19466330)
chr3 (30-99)||(18148709-18148778)
chr3 (30-130)||(18117622-18117722)
chr3 (364-405)||(19416057-19416098)
chr3 (30-130)||(18105395-18105494)
chr3 (50-130)||(19463086-19463166)
chr3 (28-75)||(17725508-17725555)
chr3 (28-75)||(19026737-19026784)
chr3 (30-86)||(18871940-18871996)
[»] chr6 (2 HSPs)
chr6 (355-405)||(13663983-13664033)
chr6 (269-303)||(13664090-13664124)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 17943851 - 17943980
Alignment:
Q  1 tctctcttatttttattagtttatgtatcagtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagct 100  Q
    |||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17943851 tctctcttctttttattagtttatgtatcactttatgcagatagttgcagaataagagtttgtgtgcaaactttggtgctttcaattttacattatagct 17943950  T
Q  101 agatgccatattatatttgatttgcattac 130  Q
    ||||||||||||||||||||||||||||||    
T  17943951 agatgccatattatatttgatttgcattac 17943980  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 227 - 405
Target Start/End: Original strand, 17944103 - 17944282
Alignment:
Q  227 atatgataacaaatgcttaaagttaacaagttctaataatatacatatttgtaaagaaaatactgaagtcttccctgcattttccaagtctt-tttgttt 325  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  17944103 atatgataacaaatgcttaaagttaacaaattctaacaatatacatatttgtaaagaaaatactgaagtcttccctgcattttctaagtcttctttgttt 17944202  T
Q  326 ggatgtttctcnnnnnnnnnnnnnnnnnnctttctagcttcttaatttcatattccaatatttctacataatcatattca 405  Q
    |||||||||||                  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17944203 ggatgtttctcttttttttttttctctttctttctagcttcttaatttcatattccaatatttctacatcatcatattca 17944282  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 19466264 - 19466330
Alignment:
Q  33 ttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagc 99  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  19466264 ttatgcagatagttgcagaataagagtttgtgtagaaactttgctgcttttaattttacattatagc 19466330  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 18148709 - 18148778
Alignment:
Q  30 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagc 99  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||| |||||| ||||| ||||||||||    
T  18148709 agtttatgcagatagttgcagaataagagtttgtgtagaaattttgctgcttttaatttcacattatagc 18148778  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 18117622 - 18117722
Alignment:
Q  30 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcatta 129  Q
    ||||||||| |||| |||||||||||||  |||||  ||||||||| |||||  |||||||||||||||||| || |||||| | ||||||||| |||||    
T  18117622 agtttatgcggatagttgcagaataagaaattgtgcagaaactttgttgcttataattttacattatagctaaatcccatatgaaatttgattttcatta 18117721  T
Q  130 c 130  Q
    |    
T  18117722 c 18117722  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 19416057 - 19416098
Alignment:
Q  364 ttcttaatttcatattccaatatttctacataatcatattca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19416057 ttcttaatttcatattccaatatttctacataatcatattca 19416098  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 18105395 - 18105494
Alignment:
Q  30 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcatta 129  Q
    ||||||||| |||| ||||| |||||||  |||||| ||||||||  |||||  |||||||||||||||||| || |||||| | |||| |||| |||||    
T  18105395 agtttatgcggatagttgcaaaataagaaattgtgtagaaactttc-tgcttataattttacattatagctaaatcccatatgaaattttattttcatta 18105493  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 19463086 - 19463166
Alignment:
Q  50 gaataagagtttgtgttgaaactttggtgctttcaattttacattatagctagatgccatattatatttgatttgcattac 130  Q
    ||||||||  |||||| ||||||||| |||||  |||||||||||||| ||| || |||||| | ||||||||| ||||||    
T  19463086 gaataagaaattgtgtagaaactttgatgcttataattttacattatatctaaatcccatatgaaatttgattttcattac 19463166  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 17725555 - 17725508
Alignment:
Q  28 tcagtttatgcagataattgcagaataagagtttgtgttgaaactttg 75  Q
    |||||||||||||||  ||| ||||||||||||||||| |||||||||    
T  17725555 tcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg 17725508  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 19026784 - 19026737
Alignment:
Q  28 tcagtttatgcagataattgcagaataagagtttgtgttgaaactttg 75  Q
    |||||||||||||||  ||| ||||||||||||||||| |||||||||    
T  19026784 tcagtttatgcagatggttgtagaataagagtttgtgtagaaactttg 19026737  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 18871996 - 18871940
Alignment:
Q  30 agtttatgcagataattgcagaataagagtttgtgttgaaactttggtgctttcaat 86  Q
    |||||||||||||  ||  ||||||||||||||||| ||||||||| ||||| ||||    
T  18871996 agtttatgcagatggtttaagaataagagtttgtgtagaaactttgctgcttccaat 18871940  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 13664033 - 13663983
Alignment:
Q  355 ctttctagcttcttaatttcatattccaatatttctacataatcatattca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13664033 ctttctagcttcttaatttcatattccaatatttctacataatcatattca 13663983  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 13664124 - 13664090
Alignment:
Q  269 acatatttgtaaagaaaatactgaagtcttccctg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  13664124 acatatttgtaaagaaaatactgaagtcttccctg 13664090  T

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