View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_1 (Length: 966)
Name: NF3173_high_1
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 823; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 823; E-Value: 0
Query Start/End: Original strand, 14 - 950
Target Start/End: Original strand, 1021089 - 1022029
Alignment:
| Q |
14 |
catcatttcaataaacctaaccaacctagatatcatagcacttcagattaactaacacttgcactt-gtttttcaagttctt-gtttcccttcaaaacct |
111 |
Q |
| |
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||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
1021089 |
catcacttcagtaaacctaaccaacctagata-----gcacttcagattaac----acttgcactttgtttttcaagttctttgtttcccttcaaaacct |
1021179 |
T |
|
| Q |
112 |
tcttcaacatttgtttttgtttaatatacgcatacacacgttcaaata-----------tacggtatatatataccacctgaaacaatgggttgtacggt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
1021180 |
tcttcaacatttgtttttgtttaatatacgcatacagacgttcaaatacgtgtataatatacggtatatatataccacctgaaacaatgggttgcactgt |
1021279 |
T |
|
| Q |
201 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021280 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
1021379 |
T |
|
| Q |
301 |
tctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1021380 |
tctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctctccgtctccgacgacattcccgctgttttca |
1021479 |
T |
|
| Q |
401 |
tcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1021480 |
tcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaa |
1021579 |
T |
|
| Q |
501 |
aattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatcaaaat |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1021580 |
aattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgattttccgaactggttcattccaaccgcgcatcaaaat |
1021679 |
T |
|
| Q |
601 |
gaatcaacagcttctgaaacttcttctgtttggaattgggaaaattttcaacctcctccttctccaccaaactccgaatatttccggcaacgttctcaac |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1021680 |
gaatcaacagcttctgaaacttcttctgtttggaattgggagaattttcaacctcctccttctccaccaaactccgaatatttccggcaacgttctcaac |
1021779 |
T |
|
| Q |
701 |
cgccgaatcacaaactggaaaatccagaatccgatacatcatcagaatcgttctacaacatgttccactcgaaaattcatcttcagaatcacaagactga |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1021780 |
cgccgaatcacaaactggaaaatccagaatccgatacatcatcagaatcgttctacaacatgttccactcgaaaattcatcttcagaatcacaagactga |
1021879 |
T |
|
| Q |
801 |
aacggaacaagaactagatcgtttggaaacggaacgtgaggaggttcggtgtagtgattgggaggattgttatggttcaacaagctcatcagatagagat |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1021880 |
aacggaacaagaactagatcgtttggaaacggaacgtgaggaggttcggtgtagtgattgggaggattgttatcgttcaacaagctcatcagatagagat |
1021979 |
T |
|
| Q |
901 |
gaagttatcgccggtttgaagtcatcggaaaaatcaccggagtttgttgc |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1021980 |
gaagttatcgccggtttgaagtcatcggaaaaatcaccggagtttgttgc |
1022029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 297 - 583
Target Start/End: Original strand, 4970737 - 4971014
Alignment:
| Q |
297 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
396 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
4970737 |
tcattctgattactataactctcttcgcctcaccggttccgcactctccaccttcgctgccagtgaacctctcgccgtcttcgacgacattcccgccgtt |
4970836 |
T |
|
| Q |
397 |
ttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgcc |
496 |
Q |
| |
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||| |||||||||| |||||| | | ||||||||||| |||| || | ||||||| ||||||||| ||||| ||||||||| | |||||| |
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| T |
4970837 |
ttcgtcaacacagtaaaaactcataaacaaccgccacctc------ctccagccacagtaacaactacaaaactctgtacattttctgaaacatgtcgcc |
4970930 |
T |
|
| Q |
497 |
ggaaaattccggtgaagcttcctcacattctttccgattca---------agcgtttgttcaacgccgagaagcgagtttccgaactggttcattc |
583 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4970931 |
------------tgaagcttcctcacattctttccaattcaagcatttgtagcatttgttcaacgccgagaagcgagtttccgaactggttcattc |
4971014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 297 - 603
Target Start/End: Complemental strand, 6345091 - 6344803
Alignment:
| Q |
297 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
6345091 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccaccttcgccgccagtgaacctctcgtcgtctccgacgacattcccgccgtt |
6344992 |
T |
|
| Q |
397 |
ttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgcc |
496 |
Q |
| |
|
||| |||||||||| |||||| ||| || |||||||| |||| || ||||||||| ||||||||| ||||| ||||||||| | |||||| |
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|
| T |
6344991 |
ttcgtcaacacagtaaaaactcatcaacaacagccacctc------ctccagccaccgtaacaactacaaaactctgtacattttctgaaacatgtcgcc |
6344898 |
T |
|
| Q |
497 |
ggaaaattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatca |
596 |
Q |
| |
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||||||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6344897 |
------------tgaagcttcctcacattttttctgattcaagcatttgttcaatgtcgagaagcgagtttccgaactggttcattccaaccgcgcatca |
6344810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 405
Target Start/End: Complemental strand, 31344725 - 31344534
Alignment:
| Q |
214 |
aacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgta |
313 |
Q |
| |
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|||||||| || || |||||||||||||| || |||||||| ||||| ||||| | || ||||| || ||||||| || ||||| || || ||||| |
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| T |
31344725 |
aacgaagatacagtgcgacggtgcaaagaccgtcgccgtcttatgaaagaagctgtctatgctcgtcatcacctcgccgctgctcactccgactactgcc |
31344626 |
T |
|
| Q |
314 |
actctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaac |
405 |
Q |
| |
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|| || || |||||||| |||| ||||||||||||||| |||||||||||||| |||| || || ||| |||||| |||||||||||| |
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|
| T |
31344625 |
gttccctccgtctcaccggcaccgccctctccactttcgcctccggtgaacctctctccgtttctgataacactcccgccgttttcatcaac |
31344534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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