View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_10 (Length: 586)
Name: NF3173_high_10
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 569
Target Start/End: Complemental strand, 30834684 - 30834112
Alignment:
| Q |
7 |
gaagttcccttttctaaagcatttgatttgaatnnnnnnnnnntgcaagagaatctcatgtaatgttgccaactagagcagttataatttataagcttca |
106 |
Q |
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| T |
30834684 |
gaagttcccttttctaaagcatttgatttgaataaaaaaaaa-tgcaagagaatctcatgtaatgttgccaactagagcagttataatttataagcttca |
30834586 |
T |
|
| Q |
107 |
catgtcagatttgaatgcacgctgtgtttacactccaagtatcaggccatttgctaa-----------atattcaactagtgtttactagtatcacgtta |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||| |
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| T |
30834585 |
catgtcagatttgaatgcacgctgtgtttacactccaaggatcaggccatttaccaattggtgcccaaatattcaactagtgtttactagtatcacgtta |
30834486 |
T |
|
| Q |
196 |
aaagtgtatgtttgatattacaatagatgtgtcagaatcacgacgatccatcataattttacacaagttacaaagtgtaactcttagaaaatcaccatgg |
295 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30834485 |
aaagtgtatgtttggtattacaatagatgtgtcagaatcacgacgatccatcataattttacggaagttacaaagtgtaactcttagaaaatcaccatgg |
30834386 |
T |
|
| Q |
296 |
agcgtaaaaatatgtgttaacgtaaaaaagttacatatttatgtaatgatatgatgatgggtacgttgagtggaaataaatggaaagaatggtgataggg |
395 |
Q |
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| T |
30834385 |
agcgtaaaaatatgtgttaacgtaaaaaaattacatatttatataatgatatgatgatgggtacgttgagtggaaataaatggaaggaatggtgataggg |
30834286 |
T |
|
| Q |
396 |
aaggaatatgaataacacgaaatgatgaaccaataaactaggtaatatggtgtgttccagagaactccagtgtaataacaaaacattccttcttctaagc |
495 |
Q |
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| T |
30834285 |
aaggaatatgaataatacgaaatgatgaaccaataaactaggtaatatggtgtgttccagagaactccagtgtaataacaaaacattccttcttctaagc |
30834186 |
T |
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| Q |
496 |
tttgacgtgtctcaattaatctgacaagtttagctcgtggcaatgtttggattaagaagctgaatcactgcaat |
569 |
Q |
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| T |
30834185 |
tttgacgtgtctcaattaatctgacaagtttagctcgtggcaatgtttggattaagaagctgaatcactgcaat |
30834112 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 36729412 - 36729467
Alignment:
| Q |
212 |
attacaatagatgtgtcagaatcacgacgatccatcataattttacacaagttaca |
267 |
Q |
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| T |
36729412 |
attacaatgggtgtgtaagaatcacgacgatgcatcataattttacaaaaattaca |
36729467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 35015754 - 35015844
Alignment:
| Q |
200 |
tgtatgtttgatattacaatagatgtgtcagaatcacgacgatccatcataattttacacaagttacaaagtgtaactcttagaaaatcac |
290 |
Q |
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|||||||| |||||||| | |||||||||||||||| | || | ||||||||||| || || ||||||||||| || ||||| |||||| |
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| T |
35015754 |
tgtatgttcgatattacggtggatgtgtcagaatcacaatgacctatcataattttgcagaaactacaaagtgtagcttttagacaatcac |
35015844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 42722385 - 42722308
Alignment:
| Q |
197 |
aagtgtatgtttgatattacaatagatgtgtcagaatcacgacgatccatcataattttacacaagttacaaagtgta |
274 |
Q |
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||||||||||||||||||||| ||| | |||||||||||| || ||| | ||||||| || |||||| |||||||| |
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| T |
42722385 |
aagtgtatgtttgatattacagtaggcttatcagaatcacgatgacccaccttaattttgcagaagttataaagtgta |
42722308 |
T |
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