View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_105 (Length: 245)
Name: NF3173_high_105
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_105 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 30569159 - 30569365
Alignment:
| Q |
12 |
atgagatgaaaccaagcgtaagcttttttatgacaaatttcatatttggaatgcnnnnnnnntaagtacctggtgacatattccttgttctacaaattgc |
111 |
Q |
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| T |
30569159 |
atgaaatgaaaccaagcataagcttttatatgacaaatttcatatatgaaatgcaaaaaaa-tgagtacctggtgagatattccttgttctacaatttgc |
30569257 |
T |
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| Q |
112 |
tcagaaggaatcattgttgaaacatatataaacaaaagtgaagatgaggtaagttatgaagagaatgatgagatagagaaatatatagaaaatgagtaat |
211 |
Q |
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| T |
30569258 |
tcagaaggattcattgttgaaacatatata---------gaaaatgaggtaagttatgaagagaatgatgagatagagaaatatatagaaaatgagtaat |
30569348 |
T |
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| Q |
212 |
ggaagaagtgaagtagt |
228 |
Q |
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||||||||||||||||| |
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| T |
30569349 |
ggaagaagtgaagtagt |
30569365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 30424560 - 30424509
Alignment:
| Q |
12 |
atgagatgaaaccaagcgtaagcttttttatgacaaatttcatatttggaat |
63 |
Q |
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|||| |||||||||||| |||| |||| |||||||||||| ||||||||||| |
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| T |
30424560 |
atgaaatgaaaccaagcataagattttatatgacaaatttaatatttggaat |
30424509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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