View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_114 (Length: 239)

Name: NF3173_high_114
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_114
NF3173_high_114
[»] chr1 (2 HSPs)
chr1 (1-229)||(9802438-9802666)
chr1 (2-233)||(37737439-37737670)
[»] chr8 (1 HSPs)
chr8 (1-229)||(18551195-18551423)
[»] chr7 (3 HSPs)
chr7 (1-229)||(19813329-19813557)
chr7 (2-233)||(3004752-3004983)
chr7 (7-224)||(18477396-18477613)
[»] chr5 (3 HSPs)
chr5 (2-224)||(23884110-23884332)
chr5 (80-224)||(36731376-36731520)
chr5 (15-63)||(23958765-23958813)
[»] chr2 (3 HSPs)
chr2 (2-233)||(23682075-23682300)
chr2 (2-64)||(4939315-4939377)
chr2 (2-64)||(5024405-5024467)
[»] chr3 (1 HSPs)
chr3 (12-61)||(18963319-18963368)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9802438 - 9802666
Alignment:
Q  1 cagaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9802438 cagaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcaga 9802537  T
Q  101 aagtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9802538 aagtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatatgaatttgct 9802637  T
Q  201 tgcttgaaaccttgagccacaagtgatga 229  Q
    |||||||||||||||||||||||| ||||    
T  9802638 tgcttgaaaccttgagccacaagtaatga 9802666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 37737439 - 37737670
Alignment:
Q  2 agaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcagaa 101  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||  ||  ||| |||| || ||||||||||    
T  37737439 agaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagattggtgaagtatgtctttaatgttttgaaattcagaa 37737538  T
Q  102 agtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgctt 201  Q
    |||||||| ||||| |||||||| | ||| ||||| ||||| || || ||| |||  || |||||| ||||||||||||  || ||||||||||| ||||    
T  37737539 agtgaattccctgcaagaatgatatcatccacatatacaagaagaatagtgaatgttgaggatgaagatttggtgaataaggaatgatctgaattagctt 37737638  T
Q  202 gcttgaaaccttgagccacaagtgatgatgtc 233  Q
    ||||||||||||||||||||||| | ||||||    
T  37737639 gcttgaaaccttgagccacaagtaaagatgtc 37737670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 18551195 - 18551423
Alignment:
Q  1 cagaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcaga 100  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||| |||||||||||| || |||||||||    
T  18551195 cagaatgagctacttctaaaccaaggaaatatttcaactggccaagatctttgattttgaaagagttatgaagaatggttttgatgttttcaaattcaga 18551294  T
Q  101 aagtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgct 200  Q
    ||||||||| |||||||| ||||| | ||||||||||||||| | ||| ||| |||||||||||||  |||| ||||| ||||| |||||||||||| ||    
T  18551295 aagtgaatttcctgctaggatgatatcatctacatagacaagaattatggtgaatgaagaagatgaggattttgtgaagagagaatgatctgaattttct 18551394  T
Q  201 tgcttgaaaccttgagccacaagtgatga 229  Q
    ||||||||||||||||||| |||| ||||    
T  18551395 tgcttgaaaccttgagccataagtaatga 18551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 19813329 - 19813557
Alignment:
Q  1 cagaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcaga 100  Q
    ||||| |||| ||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||||||| |||||||||||| || |||||||||    
T  19813329 cagaatgagcaacttctaaaccaaggaagtattttaattggcaatgatctttgattttgaaagagttgtggagaatggttttgatgttttcaaattcaga 19813428  T
Q  101 aagtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgct 200  Q
    ||||||||||| |||||  ||||| | ||||||||| ||||| || | |||  || |||| |||||  |||| |||||||| || ||||  |||||||      
T  19813429 aagtgaattgcttgctaagatgatatcatctacatatacaaggagaactgtaaattaagaggatgatgatttagtgaatagggaatgattagaatttgtc 19813528  T
Q  201 tgcttgaaaccttgagccacaagtgatga 229  Q
    |||||||||||||||||||||||| ||||    
T  19813529 tgcttgaaaccttgagccacaagtaatga 19813557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 3004983 - 3004752
Alignment:
Q  2 agaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcagaa 101  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||  ||  ||| |||| || ||||||||||    
T  3004983 agaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagattggtgaagtatgtctttaatgttttgaaattcagaa 3004884  T
Q  102 agtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgctt 201  Q
    |||||||| ||||| |||||||| | ||| ||||| ||||| || || ||| |||  || |||||| ||||||||||||  || ||||||||||| ||||    
T  3004883 agtgaattccctgcaagaatgatatcatccacatatacaagaagaatagtgaatgttgaggatgaagatttggtgaataaggaatgatctgaattagctt 3004784  T
Q  202 gcttgaaaccttgagccacaagtgatgatgtc 233  Q
    ||||||||||||||||||||||| | ||||||    
T  3004783 gcttgaaaccttgagccacaagtaaagatgtc 3004752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 18477613 - 18477396
Alignment:
Q  7 gagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcagaaagtga 106  Q
    |||| |||||||||||||| ||| |||| || ||||||||||| ||||||||||||||||| || ||  | ||||||||||||| |||||||||||||||    
T  18477613 gagcaacttctaaaccaagaaaaaatttcaactggccaagatccttgattttgaaggagttatgaaggatagttttgatgtgttcaaattcagaaagtga 18477514  T
Q  107 attgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgcttgcttg 206  Q
    ||| | ||| | |||||| | ||| ||||||| ||| ||||| ||| ||||  |||||||| |||||||||||||| | |||| |||||| ||||| |||    
T  18477513 attacttgcaaaaatgatatcatccacatagataagtagtatggtgaatgagaaagatgaagatttggtgaatagaaaatgatatgaattagcttgattg 18477414  T
Q  207 aaaccttgagccacaagt 224  Q
    ||||||||| ||||||||    
T  18477413 aaaccttgaaccacaagt 18477396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 23884110 - 23884332
Alignment:
Q  2 agaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcagaa 101  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||  ||||||||  | ||||||| ||    
T  23884110 agaatgagctacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagaattgtgaagaatgtctttgatgttctgaaattcataa 23884209  T
Q  102 agtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgctt 201  Q
    ||||| || ||||| |||||||| | ||| ||||| ||||| ||||||||| ||||||||||| |  ||||||||||||  || | || |||||| ||||    
T  23884210 agtgagtttcctgcaagaatgatatcatccacatacacaagaagtattgtgaatgaagaagatcatgatttggtgaataatgaattatttgaattagctt 23884309  T
Q  202 gcttgaaaccttgagccacaagt 224  Q
    ||||||| |||||||||||||||    
T  23884310 gcttgaagccttgagccacaagt 23884332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 36731376 - 36731520
Alignment:
Q  80 tttgatgtgtttaaattcagaaagtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaat 179  Q
    |||||||| || ||||| |||||||||||| ||||| |||||||| | ||| ||||| ||||| || || ||| |||  || |||||| |||||||||||    
T  36731376 tttgatgttttgaaatttagaaagtgaattccctgcaagaatgatatcatccacatatacaagaagaatagtgaatgttgaggatgaagatttggtgaat 36731475  T
Q  180 agagagtgatctgaatttgcttgcttgaaaccttgagccacaagt 224  Q
    |  || ||||||||||| |||||||||||||||||||||||||||    
T  36731476 aaggaatgatctgaattagcttgcttgaaaccttgagccacaagt 36731520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23958813 - 23958765
Alignment:
Q  15 tctaaaccaaggaaatattttaattggccaagatctttgattttgaagg 63  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  23958813 tctaaaccaaggaagtatttcaattggccaagatctttaattttgaagg 23958765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 23682300 - 23682075
Alignment:
Q  2 agaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaaggagttgtggagagtggttttgatgtgtttaaattcagaa 101  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||||||      | || | ||| ||  ||  |||||||| || ||||||||||    
T  23682300 agaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga------aagattggtgaagtatgtctttgatgttttgaaattcagaa 23682207  T
Q  102 agtgaattgcctgctagaatgattttatctacatagacaagcagtattgtgtatgaagaagatgaaaatttggtgaatagagagtgatctgaatttgctt 201  Q
    |||||||| ||||| |||||||| | ||| ||||||||||| || || ||| |||  || |||||| ||||||||||||  || ||||||||||| ||||    
T  23682206 agtgaatttcctgcaagaatgatatcatccacatagacaagaagaatagtgaatgttgaggatgaagatttggtgaataaggaatgatctgaattagctt 23682107  T
Q  202 gcttgaaaccttgagccacaagtgatgatgtc 233  Q
    ||||||||||||||||||||||| | ||||||    
T  23682106 gcttgaaaccttgagccacaagtaaagatgtc 23682075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 4939315 - 4939377
Alignment:
Q  2 agaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaagga 64  Q
    |||| |||| || |||||||||||  ||||||||| ||| || ||||||||||||||||||||    
T  4939315 agaatgagccacctctaaaccaagataatattttagttgtcctagatctttgattttgaagga 4939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 5024405 - 5024467
Alignment:
Q  2 agaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaagga 64  Q
    |||| |||| || |||||||||||  ||||||||| ||| || ||||||||||||||||||||    
T  5024405 agaatgagccacctctaaaccaagataatattttagttgtcctagatctttgattttgaagga 5024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 18963319 - 18963368
Alignment:
Q  12 acttctaaaccaaggaaatattttaattggccaagatctttgattttgaa 61  Q
    ||||||||||||||||||||||| || || ||||||||||| ||||||||    
T  18963319 acttctaaaccaaggaaatatttcaactgaccaagatctttaattttgaa 18963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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