View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_119 (Length: 237)
Name: NF3173_high_119
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_119 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 1336107 - 1336326
Alignment:
| Q |
18 |
atgaagtggaaagtgctacctccaatgccaaaacaaaactcacatattgaatttgcatgggtgcttgtaaacaattccattgttattgctggaggcacaa |
117 |
Q |
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| T |
1336107 |
atgaagtggaaagtgctacctccaatgccaaaacaaaactcacatattgaatttgcatgggtgcttgtaaacaattccattgttattgctggaggcacaa |
1336206 |
T |
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| Q |
118 |
cagagaagcaccctgaaactaagaaaatggttttaaatggagaagtgttccagtttaacttgaatactttggtacacacttctcttataaagctcttagg |
217 |
Q |
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| T |
1336207 |
cagagaagcaccctgaaactaagaaaatggttttaaatggagaagtgttccagtttaacttgaatactttggtacacacttctcttataaagctcttagg |
1336306 |
T |
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| Q |
218 |
aaaattgtttttgttgctgc |
237 |
Q |
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|||||||||||||||||||| |
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| T |
1336307 |
aaaattgtttttgttgctgc |
1336326 |
T |
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