View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_12 (Length: 539)
Name: NF3173_high_12
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Complemental strand, 45731887 - 45731401
Alignment:
| Q |
16 |
atggttggtcgaattggtgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaacagggataggcgaagcactaatac |
115 |
Q |
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| T |
45731887 |
atggttggtcgaattggtgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaacagggataggcgaagcactaatac |
45731788 |
T |
|
| Q |
116 |
gcgggacagtagcaagagatgtggctgcaatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgttgtacatgagcgcataccaaaggg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45731787 |
gcgggacagtagcaagagatgtggctgcaatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgttgtacatgagcgcataccaaaggg |
45731688 |
T |
|
| Q |
216 |
cactgttggtttggttgctgtgtctgctgctggagaagttgcaatgccctataatacaccaggaatgtttagagcctgtgctactgaagatgggtattct |
315 |
Q |
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| T |
45731687 |
cactgttggtttggttgctgtgtctgctgctggagaagttgcaatgccctataatacaccaggaatgtttagagcctgcgctactgaagatgggtattct |
45731588 |
T |
|
| Q |
316 |
caggttgcaatttggtcagatgctataattgagtgatttttagatctttatggttttcaaacttaattttgttataacattttatgttgatgattcatgt |
415 |
Q |
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| T |
45731587 |
gaggttgcaatttggtcagatgctataattgagtgatttttagacctttatggttttcaaacttaattttgttataacattttatgttgatgattcatgt |
45731488 |
T |
|
| Q |
416 |
atggttatatcataaggaaatctatttgattgggaaggtacatattgttgtttggtccttgcgcatagtcttttttagggcctcata |
502 |
Q |
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| T |
45731487 |
atggttatatcataaggaaatctatttgattgggaaggtacatattgttgtttggtccctacgcatagtcttctttagggcctcata |
45731401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 45737217 - 45736753
Alignment:
| Q |
16 |
atggttggtcgaattggtgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaacagggataggcgaagcactaatac |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
45737217 |
atggttggtcgaattggcgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaacaggaaaaggcgaagcagtaatac |
45737118 |
T |
|
| Q |
116 |
gcgggacagtagcaagagatgtggctgcaatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgttgtacatgagcgcataccaaaggg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45737117 |
gcgggacagtagcaagagatgtggctgcgatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgttgtacatgagcgcacaccaaaggg |
45737018 |
T |
|
| Q |
216 |
cactgttggtttggttgctgtgtctgctgctggagaagttgcaatgccctataatacaccaggaatgtttagagcctgtgctactgaagatgggtattct |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||||| ||| |
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| T |
45737017 |
tacagttggtttggttgctgtgtctgctgctggagaagttgcaatgccttataatacaacaggaatgtttagagcttgtgctgctgaagatgggtactct |
45736918 |
T |
|
| Q |
316 |
caggttgcaatttggtcagatgctataattgagtgatttttagatctttatggttttcaaacttaattttgttataacattttatgttgatgattcatgt |
415 |
Q |
| |
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|||||||||||||| | ||| ||| ||||||||||| |||||| ||||||| ||| ||||||||| |||||||||||||||||||| |
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| T |
45736917 |
gaggttgcaatttggccggatactaaaattgagtgatgtttagacctttatgatttccaaacttaa--------------tttatgttgatgattcatgt |
45736832 |
T |
|
| Q |
416 |
atggttatatcataaggaaatctatttgattgggaaggtacatattgttgtttggtccttgcgcatagtcttttttagg |
494 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||| |
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| T |
45736831 |
atggttatatcataaggaaatctatttgattggcgaggtacatattgttgtttggttcccgcgcatagtcttctttagg |
45736753 |
T |
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