View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_126 (Length: 234)
Name: NF3173_high_126
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_126 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6222087 - 6221868
Alignment:
| Q |
1 |
atgaggttggaaccacaaaaactgccttcaaaggaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatc |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222087 |
atgaggttggaaccccaaaaattgccttcaaaggaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatc |
6221988 |
T |
|
| Q |
101 |
gtgtccccactcctaagatatgaagaacgaccctctgctcgcactcctcctagacagagttaaaatcaccaaagacacaccaaccaaatacccccaaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6221987 |
gtgtccccactcctaagatatgaagaacgaccctctgctcgcactcctcctagactgagttaaaatcaccaaagacacaccaaccaaatacccccaaagc |
6221888 |
T |
|
| Q |
201 |
attaaaagtactcatcatat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6221887 |
attaaaagtactcatcatat |
6221868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6181912 - 6181693
Alignment:
| Q |
1 |
atgaggttggaaccacaaaaactgccttcaaaggaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatc |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6181912 |
atgaggttggaaccccaaaaattgccttcaaatgaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatc |
6181813 |
T |
|
| Q |
101 |
gtgtccccactcctaagatatgaagaacgaccctctgctcgcactcctcctagacagagttaaaatcaccaaagacacaccaaccaaatacccccaaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6181812 |
gtgtccccactcctaagatatgaagaacgaccctctgctcgcactcctcctagactgagttaaaatcaccaaagacacaccaaccaaatacccccaaagc |
6181713 |
T |
|
| Q |
201 |
attaaaagtactcatcatat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6181712 |
attaaaagtactcatcatat |
6181693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University