View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_127 (Length: 233)
Name: NF3173_high_127
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_127 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 5906505 - 5906284
Alignment:
| Q |
13 |
cagttaagagttgttagataaaatatcaatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtgtgttcaagaggactttttggtgg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
5906505 |
cagttaagagttgttagataaaatatcaatgaaggctgactcagttcgtacggagttgactcacccacaaggttgtgtgttcaagaggatcttttggtgg |
5906406 |
T |
|
| Q |
113 |
gtgatctgtaaatacctctgtaagcgctctttga-gggaggatatgtctgaatgaatatgattgagttttatgtctgtttcatggagagcattcctttga |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5906405 |
gtgatctgtaaatacctttgtaagcgctctttgaggggaggatatatctgaatgaatatgattgagttttatgtctgtttcttggagagcattcctttga |
5906306 |
T |
|
| Q |
212 |
caatcttatgtacttttctttc |
233 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5906305 |
caatcttatgtacttttctttc |
5906284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 3025799 - 3025749
Alignment:
| Q |
39 |
caatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtg |
89 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
3025799 |
caatgaatgttgactcagttagtaaggagttgactcacctacaaggttgtg |
3025749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 33503057 - 33503001
Alignment:
| Q |
40 |
aatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtgtgttcaa |
96 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||| ||||| ||| |||||| |
|
|
| T |
33503057 |
aatgaaggttggctcagttggtaaggaattgactcacccgtaaggtagtgggttcaa |
33503001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 2579674 - 2579620
Alignment:
| Q |
38 |
tcaatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtgtgt |
92 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||| ||||| |||||||| |
|
|
| T |
2579674 |
tcaatgaaggttggctcaattggtaaggagttgactcacctgcaagattgtgtgt |
2579620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 51798589 - 51798540
Alignment:
| Q |
40 |
aatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtg |
89 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
51798589 |
aatgaaagttgactcagctcgcaaggagttgacttacccgcaaggttgtg |
51798540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 2593553 - 2593519
Alignment:
| Q |
113 |
gtgatctgtaaatacctctgtaagcgctctttgag |
147 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2593553 |
gtgatttgtaaatacctctgtaagcgctctttgag |
2593519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 8125182 - 8125145
Alignment:
| Q |
38 |
tcaatgaaggttgactcagttcgtaaggagttgactca |
75 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
8125182 |
tcaatgaaggttgacttagttggtaaggagttgactca |
8125145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 5678 - 5629
Alignment:
| Q |
40 |
aatgaaggttgactcagttcgtaaggagttgactcacccgcaaggttgtg |
89 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
5678 |
aatgaaagttgactcagctcgcaaggagttgacttacccgcaaggttgtg |
5629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 36649295 - 36649339
Alignment:
| Q |
38 |
tcaatgaaggttgactcagttcgtaaggagttgactcacccgcaa |
82 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||| |||||||||| |
|
|
| T |
36649295 |
tcaatgaaggttgacttagttggtaagaagttgattcacccgcaa |
36649339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University