View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_133 (Length: 213)

Name: NF3173_high_133
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_133
NF3173_high_133
[»] chr7 (9 HSPs)
chr7 (5-207)||(43706781-43706978)
chr7 (7-53)||(18828929-18828976)
chr7 (7-51)||(46483861-46483907)
chr7 (7-53)||(22317216-22317262)
chr7 (7-53)||(26254557-26254603)
chr7 (7-53)||(4098095-4098143)
chr7 (7-53)||(23775131-23775179)
chr7 (7-35)||(16274708-16274736)
chr7 (7-51)||(35077868-35077912)
[»] chr4 (5 HSPs)
chr4 (11-66)||(21507810-21507867)
chr4 (7-52)||(7913442-7913488)
chr4 (7-51)||(12388086-12388130)
chr4 (7-39)||(19203827-19203859)
chr4 (7-62)||(29104148-29104204)
[»] scaffold0026 (1 HSPs)
scaffold0026 (7-52)||(84440-84485)
[»] chr2 (5 HSPs)
chr2 (7-51)||(36795156-36795200)
chr2 (7-63)||(36202108-36202166)
chr2 (12-58)||(31377547-31377593)
chr2 (7-52)||(34963592-34963639)
chr2 (7-51)||(45161393-45161437)
[»] chr1 (7 HSPs)
chr1 (7-51)||(20158979-20159023)
chr1 (7-46)||(31883789-31883828)
chr1 (13-52)||(47838526-47838565)
chr1 (7-53)||(15734472-15734520)
chr1 (7-52)||(44961334-44961379)
chr1 (7-39)||(16985035-16985067)
chr1 (7-39)||(16985204-16985236)
[»] chr8 (3 HSPs)
chr8 (7-62)||(16009858-16009913)
chr8 (7-53)||(22981048-22981096)
chr8 (7-51)||(35839410-35839455)
[»] chr6 (1 HSPs)
chr6 (7-46)||(10343812-10343851)
[»] chr5 (7 HSPs)
chr5 (7-53)||(25088878-25088925)
chr5 (7-53)||(25146847-25146894)
chr5 (7-54)||(7885018-7885067)
chr5 (10-51)||(12068099-12068140)
chr5 (7-53)||(16867758-16867806)
chr5 (17-53)||(20627957-20627993)
chr5 (23-74)||(21127503-21127555)
[»] chr3 (6 HSPs)
chr3 (17-51)||(13439904-13439938)
chr3 (9-51)||(31073989-31074031)
chr3 (7-53)||(5154719-5154767)
chr3 (7-53)||(7731268-7731316)
chr3 (6-54)||(13468355-13468403)
chr3 (7-52)||(37585635-37585682)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 43706978 - 43706781
Alignment:
Q  5 agaaaccgaaagtgacatatat--tacaggggtaaaacactatttacccaatatttaatttcaaatgaagagactactgtattttgttgtgtgttgtgtt 102  Q
    ||||||||||||||||||||||  ||||||| |||||| || |||||  || ||||||||||||| ||||||||||     |||||||||||||||||||    
T  43706978 agaaaccgaaagtgacatatatattacaggg-taaaac-ctgtttactgaacatttaatttcaaacgaagagacta-----ttttgttgtgtgttgtgtt 43706886  T
Q  103 caaacaaagtaatggaccattgcatctcatatctacattattccaaaaatagaccatcaattgtctctctcaatcaattaccaaacggtgaatgcgcact 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43706885 caaacaaagtaatggaccattgcatctcatatctacattattccaaaaatagacaatcaattgtctctctcaatcaattaccaaacggtgaatgcgcact 43706786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 18828929 - 18828976
Alignment:
Q  7 aaaccgaaagtgacatatattaca-ggggtaaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  18828929 aaaccgaaaatgacatatattacagggggtaaaacactattgacccaa 18828976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 46483861 - 46483907
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttaccc 51  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||    
T  46483861 aaaccgaaagtgacatatattacaggggtgaaaaacactattaaccc 46483907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 22317262 - 22317216
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttacccaa 53  Q
    ||||||||| |||| ||||||||| ||||||||||||||| ||||||    
T  22317262 aaaccgaaaatgacctatattacaagggtaaaacactattaacccaa 22317216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 26254603 - 26254557
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttacccaa 53  Q
    ||||||||| |||| |||||| |||||||||||||||||| ||||||    
T  26254603 aaaccgaaaatgacctatattgcaggggtaaaacactattaacccaa 26254557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 4098143 - 4098095
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  4098143 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 4098095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 23775131 - 23775179
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  23775131 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 23775179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 16274708 - 16274736
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt 35  Q
    |||||||||||||||||||||||||||||    
T  16274708 aaaccgaaagtgacatatattacaggggt 16274736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 35077868 - 35077912
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    |||||| || |||||||||||||| ||||||||||||||| ||||    
T  35077868 aaaccggaaatgacatatattacaagggtaaaacactattaaccc 35077912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 21507867 - 21507810
Alignment:
Q  11 cgaaagtgacatatattaca--ggggtaaaacactatttacccaatatttaatttcaa 66  Q
    ||||| |||| |||||||||  |||||||||||||||| |||||||||||||||||||    
T  21507867 cgaaaatgacctatattacatgggggtaaaacactattaacccaatatttaatttcaa 21507810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 7913442 - 7913488
Alignment:
Q  7 aaaccgaaagtgacatatattaca-ggggtaaaacactatttaccca 52  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||    
T  7913442 aaaccgaaaatgacatatattacagggggtaaaacactattaaccca 7913488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 12388130 - 12388086
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    |||||| || |||| ||||||||||||||||||||||||| ||||    
T  12388130 aaaccggaaatgacctatattacaggggtaaaacactattaaccc 12388086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 19203827 - 19203859
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaa 39  Q
    ||||||||| |||||||||||||||||||||||    
T  19203827 aaaccgaaaatgacatatattacaggggtaaaa 19203859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 29104204 - 29104148
Alignment:
Q  7 aaaccgaaagtgacatatattacagggg-taaaacactatttacccaatatttaatt 62  Q
    |||||| || |||| ||||||||||||| |||||||||||| |||| ||||||||||    
T  29104204 aaaccggaaatgacctatattacagggggtaaaacactattaaccctatatttaatt 29104148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 84440 - 84485
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccca 52  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||    
T  84440 aaaccgaaaatgtcatatattacaggggtaaaacactattaaccca 84485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 36795200 - 36795156
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  36795200 aaaccgaaaatgacctatattacaggggtaaaacactattaaccc 36795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 36202166 - 36202108
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaatatttaattt 63  Q
    ||||||||| |||||||||||||||||||  ||||||||||| |||| || ||||||||    
T  36202166 aaaccgaaaatgacatatattacaggggtgaaaaacactattaaccctatttttaattt 36202108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 31377593 - 31377547
Alignment:
Q  12 gaaagtgacatatattacaggggtaaaacactatttacccaatattt 58  Q
    |||| |||| ||||||||| ||||||||||||||| |||||||||||    
T  31377593 gaaaatgacctatattacacgggtaaaacactattaacccaatattt 31377547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 34963592 - 34963639
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttaccca 52  Q
    ||||||||| |||||||||||||||||||  ||||||||||| |||||    
T  34963592 aaaccgaaaatgacatatattacaggggtgaaaaacactattaaccca 34963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 45161393 - 45161437
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    ||||| |||||| | ||||||||||||||||||||||||| ||||    
T  45161393 aaaccaaaagtgccctatattacaggggtaaaacactattaaccc 45161437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 20158979 - 20159023
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  20158979 aaaccgaaaatgacctatattacaggggtaaaacactattaaccc 20159023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 31883789 - 31883828
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatt 46  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  31883789 aaaccaaaaatgacatatattacaggggtaaaacactatt 31883828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 47838565 - 47838526
Alignment:
Q  13 aaagtgacatatattacaggggtaaaacactatttaccca 52  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  47838565 aaagtgacctatattacaggggtaaaacactattaaccca 47838526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 15734520 - 15734472
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  15734520 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 15734472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 44961334 - 44961379
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttaccca 52  Q
    ||||||||| |||| ||||||||||||||||| ||||||| |||||    
T  44961334 aaaccgaaaatgacttatattacaggggtaaagcactattaaccca 44961379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 16985067 - 16985035
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaa 39  Q
    ||||||||| |||||||||||||||||||||||    
T  16985067 aaaccgaaaatgacatatattacaggggtaaaa 16985035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 16985236 - 16985204
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaa 39  Q
    ||||||||| |||||||||||||||||||||||    
T  16985236 aaaccgaaaatgacatatattacaggggtaaaa 16985204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 16009858 - 16009913
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatttacccaatatttaatt 62  Q
    ||||||||| |||| |||||||||||||  |||||||||| |||||||| ||||||    
T  16009858 aaaccgaaaatgacttatattacagggggtaaacactattaacccaataattaatt 16009913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 22981048 - 22981096
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  22981048 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 22981096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 35839455 - 35839410
Alignment:
Q  7 aaaccgaaagtgacatatattacagg-ggtaaaacactatttaccc 51  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||    
T  35839455 aaaccgaaaatgacatatattacaggaggtaaaacactattaaccc 35839410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 10343812 - 10343851
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggtaaaacactatt 46  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  10343812 aaaccggaaatgacatatattacaggggtaaaacactatt 10343851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 25088878 - 25088925
Alignment:
Q  7 aaaccgaaagtgacatatattac-aggggtaaaacactatttacccaa 53  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  25088878 aaaccgaaagtgacctatattacaaggggtaaaacactattaacccaa 25088925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 25146847 - 25146894
Alignment:
Q  7 aaaccgaaagtgacatatattac-aggggtaaaacactatttacccaa 53  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  25146847 aaaccgaaagtgacctatattacaaggggtaaaacactattaacccaa 25146894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 7885018 - 7885067
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaat 54  Q
    ||||||||| |||||||||||||||||||  ||||||||||| |||||||    
T  7885018 aaaccgaaaatgacatatattacaggggttaaaaacactattaacccaat 7885067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 12068099 - 12068140
Alignment:
Q  10 ccgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    |||||| |||| |||||||||||| |||||||||||||||||    
T  12068099 ccgaaaatgacctatattacagggctaaaacactatttaccc 12068140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 16867806 - 16867758
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  16867806 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 16867758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 20627993 - 20627957
Alignment:
Q  17 tgacatatattacaggggtaaaacactatttacccaa 53  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  20627993 tgacctatattacaggggtaaaacactattaacccaa 20627957  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 21127503 - 21127555
Alignment:
Q  23 atattacaggggtaaaacactatttaccc-aatatttaatttcaaatgaagag 74  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| || |||||    
T  21127503 atattacaggggtaaaacactattaaccctaatatttaatgtcatattaagag 21127555  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 13439904 - 13439938
Alignment:
Q  17 tgacatatattacaggggtaaaacactatttaccc 51  Q
    |||||||||||||||||||||||||||||| ||||    
T  13439904 tgacatatattacaggggtaaaacactattaaccc 13439938  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 31073989 - 31074031
Alignment:
Q  9 accgaaagtgacatatattacaggggtaaaacactatttaccc 51  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||    
T  31073989 accgaaaatgacctatattacaggggtaaaacactattaaccc 31074031  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 5154767 - 5154719
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  5154767 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 5154719  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 7731316 - 7731268
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttacccaa 53  Q
    ||||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  7731316 aaaccgaaaatgacatatattacaggggtgaaaaacactattaacccaa 7731268  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 13468355 - 13468403
Alignment:
Q  6 gaaaccgaaagtgacatatattacaggggtaaaacactatttacccaat 54  Q
    |||||| ||| |||| ||||||||||||||||||||| ||| |||||||    
T  13468355 gaaaccaaaaatgacctatattacaggggtaaaacaccattaacccaat 13468403  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 37585682 - 37585635
Alignment:
Q  7 aaaccgaaagtgacatatattacaggggt--aaaacactatttaccca 52  Q
    ||||||||| |||||||||||||||||||  ||||||||||| |||||    
T  37585682 aaaccgaaaatgacatatattacaggggtgaaaaacactattaaccca 37585635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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