View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_134 (Length: 212)
Name: NF3173_high_134
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_134 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7066304 - 7066506
Alignment:
| Q |
1 |
taatagaatctttggattctagaatcgatttctacattatccaaacacaaacagcttaccttcaactcgctttcagtgtacggtaggttctacattgacn |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |
|
|
| T |
7066304 |
taataggatctttggattctagaatcgatttctacattatccaaacacaaacagcttaccttcaacttgctttcagtgtacattaggttctacattg-cc |
7066402 |
T |
|
| Q |
101 |
nnnnnntgttttatagtcaattgattctgtaaaattgattccaaattgaaaataaagtgatttatgtttggatatatttatgtagaagcaacaacaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066403 |
aaaaaatgttttatagtcaattgattctgtaaaattgattccaaattgaaaataaagtgatttatgtttggatatatttatgtagaagcaacaacaacaa |
7066502 |
T |
|
| Q |
201 |
caac |
204 |
Q |
| |
|
|||| |
|
|
| T |
7066503 |
caac |
7066506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 29338570 - 29338600
Alignment:
| Q |
154 |
aaagtgatttatgtttggatatatttatgta |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29338570 |
aaagtgatttatgtttggatatatttatgta |
29338600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 4950596 - 4950567
Alignment:
| Q |
153 |
taaagtgatttatgtttggatatatttatg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4950596 |
taaagtgatttatgtttggatatatttatg |
4950567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University