View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_137 (Length: 207)

Name: NF3173_high_137
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_137
NF3173_high_137
[»] chr2 (21 HSPs)
chr2 (1-190)||(29695236-29695426)
chr2 (1-54)||(12431915-12431968)
chr2 (1-54)||(17727421-17727474)
chr2 (1-38)||(883651-883688)
chr2 (1-38)||(6986466-6986503)
chr2 (1-38)||(7257658-7257695)
chr2 (1-38)||(12419855-12419892)
chr2 (1-38)||(27545166-27545203)
chr2 (3-54)||(6986376-6986427)
chr2 (8-42)||(2464628-2464662)
chr2 (1-58)||(1218910-1218967)
chr2 (1-38)||(3435536-3435573)
chr2 (1-38)||(12432122-12432159)
chr2 (1-38)||(18901914-18901951)
chr2 (1-38)||(19859942-19859979)
chr2 (1-38)||(19860054-19860091)
chr2 (1-38)||(20999039-20999076)
chr2 (1-38)||(21734433-21734470)
chr2 (1-38)||(25621335-25621372)
chr2 (1-38)||(33986025-33986062)
chr2 (1-37)||(43688472-43688508)
[»] chr5 (23 HSPs)
chr5 (1-54)||(43490290-43490343)
chr5 (1-54)||(3762923-3762976)
chr5 (1-54)||(38376748-38376801)
chr5 (1-54)||(28358069-28358122)
chr5 (1-38)||(30592445-30592482)
chr5 (1-38)||(35527038-35527075)
chr5 (1-42)||(43490509-43490550)
chr5 (1-38)||(48154-48191)
chr5 (5-38)||(48361-48394)
chr5 (1-38)||(2908612-2908649)
chr5 (5-38)||(13413605-13413638)
chr5 (1-58)||(15510534-15510591)
chr5 (1-38)||(18541739-18541776)
chr5 (1-54)||(18914195-18914248)
chr5 (1-54)||(18914402-18914455)
chr5 (1-38)||(22196603-22196640)
chr5 (1-38)||(30870935-30870972)
chr5 (1-38)||(34457113-34457150)
chr5 (1-38)||(34457320-34457357)
chr5 (1-38)||(37656782-37656819)
chr5 (1-38)||(37781894-37781931)
chr5 (1-38)||(38131781-38131818)
chr5 (1-37)||(11632448-11632484)
[»] chr6 (12 HSPs)
chr6 (1-54)||(5269307-5269360)
chr6 (1-54)||(24558805-24558858)
chr6 (1-53)||(25184020-25184072)
chr6 (1-38)||(11313432-11313469)
chr6 (1-38)||(15101161-15101198)
chr6 (1-38)||(16877060-16877097)
chr6 (1-34)||(19712458-19712491)
chr6 (5-42)||(19753650-19753687)
chr6 (1-38)||(26339892-26339929)
chr6 (1-37)||(31924-31960)
chr6 (1-37)||(19054510-19054546)
chr6 (1-41)||(21043828-21043868)
[»] chr3 (28 HSPs)
chr3 (1-54)||(4029678-4029731)
chr3 (1-54)||(54495548-54495601)
chr3 (4-58)||(34992889-34992943)
chr3 (1-58)||(21832229-21832286)
chr3 (1-38)||(49477551-49477588)
chr3 (1-38)||(50203907-50203944)
chr3 (1-65)||(22339758-22339822)
chr3 (6-38)||(49477349-49477381)
chr3 (3-38)||(46139251-46139286)
chr3 (1-47)||(4191163-4191209)
chr3 (3-57)||(5440631-5440685)
chr3 (4-38)||(34992597-34992631)
chr3 (4-54)||(50338416-50338466)
chr3 (1-38)||(5440594-5440631)
chr3 (1-38)||(9180385-9180422)
chr3 (1-38)||(9264136-9264173)
chr3 (1-38)||(9264550-9264587)
chr3 (1-58)||(10758798-10758855)
chr3 (9-54)||(11414388-11414433)
chr3 (1-54)||(21832725-21832778)
chr3 (1-38)||(29763746-29763783)
chr3 (1-38)||(35015502-35015539)
chr3 (1-38)||(37223592-37223629)
chr3 (1-38)||(39078821-39078858)
chr3 (1-38)||(50692340-50692377)
chr3 (1-38)||(51642685-51642722)
chr3 (1-38)||(54369056-54369093)
chr3 (1-37)||(19841507-19841543)
[»] chr7 (16 HSPs)
chr7 (1-54)||(2179671-2179725)
chr7 (1-38)||(6782843-6782880)
chr7 (1-38)||(6783055-6783092)
chr7 (1-38)||(9379017-9379054)
chr7 (1-38)||(29252593-29252630)
chr7 (1-38)||(1661241-1661278)
chr7 (1-38)||(7135293-7135330)
chr7 (5-38)||(9378814-9378847)
chr7 (1-54)||(31357709-31357762)
chr7 (1-38)||(31374782-31374819)
chr7 (1-54)||(33833967-33834020)
chr7 (1-38)||(39808514-39808551)
chr7 (1-38)||(39808647-39808684)
chr7 (1-38)||(47856041-47856078)
chr7 (1-38)||(48114014-48114051)
chr7 (5-65)||(29780168-29780228)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-38)||(76869-76906)
[»] chr8 (14 HSPs)
chr8 (1-38)||(5720917-5720954)
chr8 (1-38)||(43599328-43599365)
chr8 (1-40)||(9596267-9596306)
chr8 (1-47)||(25186789-25186835)
chr8 (1-38)||(3183961-3183998)
chr8 (1-38)||(8559598-8559635)
chr8 (1-38)||(10989291-10989328)
chr8 (1-38)||(15011079-15011116)
chr8 (1-38)||(35561683-35561720)
chr8 (1-38)||(40902443-40902480)
chr8 (1-38)||(42228788-42228825)
chr8 (1-54)||(43901051-43901104)
chr8 (1-37)||(3538035-3538071)
chr8 (1-37)||(20760711-20760747)
[»] chr4 (24 HSPs)
chr4 (1-54)||(4905539-4905592)
chr4 (1-38)||(43943690-43943727)
chr4 (1-54)||(45684208-45684261)
chr4 (1-38)||(49380930-49380967)
chr4 (3-38)||(49380679-49380714)
chr4 (4-38)||(1923041-1923075)
chr4 (4-38)||(29113469-29113503)
chr4 (1-47)||(39110924-39110970)
chr4 (1-38)||(990564-990601)
chr4 (1-38)||(4645869-4645906)
chr4 (1-38)||(5488384-5488421)
chr4 (1-38)||(12016733-12016770)
chr4 (1-38)||(12016941-12016978)
chr4 (1-54)||(21498548-21498601)
chr4 (1-38)||(22867101-22867138)
chr4 (1-38)||(23018487-23018524)
chr4 (1-38)||(27634376-27634413)
chr4 (1-38)||(28497264-28497301)
chr4 (1-38)||(35269028-35269065)
chr4 (1-38)||(43972372-43972409)
chr4 (1-38)||(49544349-49544386)
chr4 (1-38)||(51469498-51469535)
chr4 (1-38)||(52810675-52810712)
chr4 (5-38)||(53738258-53738291)
[»] chr1 (21 HSPs)
chr1 (1-58)||(11590437-11590494)
chr1 (1-38)||(13959419-13959456)
chr1 (1-38)||(15391765-15391802)
chr1 (1-38)||(39649134-39649171)
chr1 (10-58)||(11018880-11018928)
chr1 (4-42)||(15013545-15013583)
chr1 (4-38)||(38871205-38871239)
chr1 (4-38)||(39648928-39648962)
chr1 (1-38)||(2697381-2697418)
chr1 (1-38)||(4022175-4022212)
chr1 (1-38)||(15391836-15391873)
chr1 (1-38)||(15392042-15392079)
chr1 (1-54)||(22826779-22826832)
chr1 (1-58)||(24382181-24382238)
chr1 (1-38)||(40521543-40521580)
chr1 (1-38)||(43361602-43361639)
chr1 (1-38)||(43361807-43361844)
chr1 (1-38)||(43423296-43423333)
chr1 (1-38)||(48558371-48558408)
chr1 (1-38)||(52846899-52846936)
chr1 (1-37)||(2997312-2997348)
[»] scaffold1112 (1 HSPs)
scaffold1112 (4-42)||(1281-1319)
[»] scaffold0989 (1 HSPs)
scaffold0989 (1-38)||(2997-3034)
[»] scaffold0434 (2 HSPs)
scaffold0434 (1-38)||(13323-13360)
scaffold0434 (1-38)||(13530-13567)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-38)||(21313-21350)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 29695426 - 29695236
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctc-acatgtcggtaaaaaacaccccatgatcttcggtatttcatatt 99  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  29695426 tcggatagataagactcttgagaagagtttataaagagtagacaatcctcacctgtacaagtcggtaaaaaacaccccatgatcttcggtatttcatatt 29695327  T
Q  100 cttatgtgtgatgcttttcatacaatattttttgtttgtttgtaattttcagagttagaaatgtagatacgttcctacttgaggggatatt 190  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29695326 cttatgtgtgatgattttcatacaatattttttgtttgtttgtaattttgagagttagaaatgtagatacgttcctacttgaggggatatt 29695236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12431915 - 12431968
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  12431915 tcggatagataagactcttgagaagagtttataaagaggagacaatcctcacct 12431968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17727421 - 17727474
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||| ||||||    
T  17727421 tcggatagataagactcttgagaagagtttataaagagaaggcaatcctcacct 17727474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 883688 - 883651
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  883688 tcggatagataagactcttgagaagagtttataaagag 883651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6986503 - 6986466
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6986503 tcggatagataagactcttgagaagagtttataaagag 6986466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7257695 - 7257658
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7257695 tcggatagataagactcttgagaatagtttataaagag 7257658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12419855 - 12419892
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12419855 tcggatagataagactcttgagaagagtttataaagag 12419892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27545203 - 27545166
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27545203 tcggatagataagactcttgagaagagtttataaagag 27545166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 6986376 - 6986427
Alignment:
Q  3 ggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||  ||||||||||||| ||| |||| ||||||    
T  6986376 ggatagataagactcttgagaggagtttataaagaggagacaatcctcacct 6986427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 2464628 - 2464662
Alignment:
Q  8 gataagactcttgagaaaagtttataaagagaaga 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  2464628 gataagactcttgataaaagtttataaagagaaga 2464662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1218967 - 1218910
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    |||||||||||| ||| ||||||| ||||||||||||| ||  |||| ||||||||||    
T  1218967 tcggatagataaaactattgagaagagtttataaagaggagtcaatcatcacctcaca 1218910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3435573 - 3435536
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  3435573 tcggatagataagactcttgagaagagtttatacagag 3435536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12432122 - 12432159
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  12432122 tcggatagataagaatcttgagaagagtttataaagag 12432159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18901951 - 18901914
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| || |||||||||||||    
T  18901951 tcggatagataagactcttgaaaagagtttataaagag 18901914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19859942 - 19859979
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  19859942 tcggatagacaagactcttgagaagagtttataaagag 19859979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19860054 - 19860091
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  19860054 tcggatagacaagactcttgagaagagtttataaagag 19860091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20999076 - 20999039
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  20999076 tcggatagacaagactcttgagaagagtttataaagag 20999039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21734433 - 21734470
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  21734433 tcggatagataagactcttgagaagagtatataaagag 21734470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25621372 - 25621335
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  25621372 tcggatagataagactcttgagaagagtatataaagag 25621335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33986062 - 33986025
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  33986062 tcggatagataagactcttgagaagagtatataaagag 33986025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43688508 - 43688472
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  43688508 tcggatagataggactcttgagaagagtttataaaga 43688472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43490343 - 43490290
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  43490343 tcggatagataagactcttgagaagagtttataaagaggagacaatcttcacct 43490290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3762923 - 3762976
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||| ||  |||||||||||    
T  3762923 tcggatagataagactcttgagaagagtttataaagaggaggcaatcttcacct 3762976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38376748 - 38376801
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  38376748 tcggatagataagactcttgagaagagtttataaagaggagacaatcctcacct 38376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28358122 - 28358069
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| |||| ||||||    
T  28358122 tcggatagacaagactcttgagaagagtttataaagaggagacaatcctcacct 28358069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30592445 - 30592482
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  30592445 tcggatagataagactcttgagaaaagtatataaagag 30592482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35527075 - 35527038
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35527075 tcggatagataagactcttgagaagagtttataaagag 35527038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43490550 - 43490509
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaaga 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  43490550 tcggatagacaagactcttgagaagagtttataaagagaaga 43490509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48191 - 48154
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  48191 tcggatagacaagactcttgagaagagtttataaagag 48154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 48394 - 48361
Alignment:
Q  5 atagataagactcttgagaaaagtttataaagag 38  Q
    ||||| ||||||||||||||||||||||||||||    
T  48394 atagacaagactcttgagaaaagtttataaagag 48361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2908649 - 2908612
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2908649 tcggatagacaagactcttgagaatagtttataaagag 2908612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 13413605 - 13413638
Alignment:
Q  5 atagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||| |||||||||||||    
T  13413605 atagataagactcttgagaagagtttataaagag 13413638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15510591 - 15510534
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    ||||||||| | |||||||||||| ||||||||||||| ||  |||| ||||||||||    
T  15510591 tcggatagacacgactcttgagaagagtttataaagaggaggcaatcctcacctcaca 15510534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18541739 - 18541776
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  18541739 tcggatagataagattcttgagaatagtttataaagag 18541776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18914248 - 18914195
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||  ||||||||||||||||||||||||| || ||| |||| ||||||    
T  18914248 tcggatagtcaagactcttgagaaaagtttataaaaaggagacaatcctcacct 18914195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18914455 - 18914402
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||  ||||||||||||||||||||||||| || ||| |||| ||||||    
T  18914455 tcggatagtcaagactcttgagaaaagtttataaaaaggagacaatcctcacct 18914402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22196640 - 22196603
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  22196640 tcggatagatatgactcttgagaagagtttataaagag 22196603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30870972 - 30870935
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  30870972 tcggatagataagattcttgagaagagtttataaagag 30870935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34457113 - 34457150
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34457113 tcggatagacaagactcttgagaagagtttataaagag 34457150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34457320 - 34457357
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34457320 tcggatagacaagactcttgagaagagtttataaagag 34457357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37656819 - 37656782
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  37656819 tcggatagataagactcttgagaagagtatataaagag 37656782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37781931 - 37781894
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  37781931 tcggatagataagactcttgagaagagtatataaagag 37781894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38131781 - 38131818
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  38131781 tcggatagataggactcttgagaagagtttataaagag 38131818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11632448 - 11632484
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  11632448 tcggatagacaagactcttgagaagagtttataaaga 11632484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5269360 - 5269307
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||| ||||||    
T  5269360 tcggatagataagactcttgagaagagtttataaagagaaggcaatcctcacct 5269307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24558805 - 24558858
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||| ||||||    
T  24558805 tcggatagataagactctttagaagagtttataaagaggagacaatcctcacct 24558858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25184020 - 25184072
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacc 53  Q
    |||||||||||||| |||||| || ||||||||||||||||| |||| |||||    
T  25184020 tcggatagataagattcttgataagagtttataaagagaagacaatcctcacc 25184072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11313469 - 11313432
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  11313469 tcggatagataagactcttgagaagagtatataaagag 11313432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15101198 - 15101161
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  15101198 tcggatagacaagactcttgagaagagtttataaagag 15101161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16877097 - 16877060
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  16877097 tcggatagacaagactcttgagaagagtttataaagag 16877060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19712491 - 19712458
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  19712491 tcggatagataagactcttgagaatagtttataa 19712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 19753687 - 19753650
Alignment:
Q  5 atagataagactcttgagaaaagtttataaagagaaga 42  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  19753687 atagataggactcttgagaagagtttataaagagaaga 19753650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26339929 - 26339892
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  26339929 tcggatagataagaatcttgagaagagtttataaagag 26339892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31960 - 31924
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31960 tcggatagataagactcttgataagagtttataaaga 31924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19054510 - 19054546
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  19054510 tcggatagataacactcttgagaagagtttataaaga 19054546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21043868 - 21043828
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaag 41  Q
    |||||||||||  ||||||||||| ||||||||||||||||    
T  21043868 tcggatagatagcactcttgagaagagtttataaagagaag 21043828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4029731 - 4029678
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||| | | |||||||||||    
T  4029731 tcggatagataagactcttgagaagagtttataaagaggatacaatcttcacct 4029678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54495548 - 54495601
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  54495548 tcggatagataagactcttgagaagagtttataaagaggagacaatcctcacct 54495601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 34992889 - 34992943
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    ||||||||||||||||||||| ||||||||||||| ||  |||| ||||||||||    
T  34992889 gatagataagactcttgagaagagtttataaagaggaggcaatcctcacctcaca 34992943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21832286 - 21832229
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    ||||||||| |||||||||||||||||||||||||||  ||  |||| ||||||||||    
T  21832286 tcggatagacaagactcttgagaaaagtttataaagatgaggcaatcctcacctcaca 21832229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49477551 - 49477588
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  49477551 tcggatagataagactcttgagaagagtttataaagag 49477588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50203944 - 50203907
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50203944 tcggatagataagactcttgagaagagtttataaagag 50203907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22339758 - 22339822
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcacatgtcggt 65  Q
    ||||||||| |||||||||||||| ||||||||||||| ||  |||| |||||| ||| ||||||    
T  22339758 tcggatagacaagactcttgagaagagtttataaagaggaggcaatcctcaccttacaagtcggt 22339822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 49477349 - 49477381
Alignment:
Q  6 tagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||||||||||||    
T  49477349 tagataagactcttgagaaaagtttataaagag 49477381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 46139251 - 46139286
Alignment:
Q  3 ggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||| |||||||||||||||||||||||||    
T  46139251 ggatagataacactcttgagaaaagtttataaagag 46139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4191209 - 4191163
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatc 47  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||||    
T  4191209 tcggatagacaagactcttgagaagagtttataaagaggagacaatc 4191163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 5440631 - 5440685
Alignment:
Q  3 ggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcac 57  Q
    ||||||| |||||||||||||| ||||||||||||| ||  |||| |||||||||    
T  5440631 ggatagacaagactcttgagaagagtttataaagaggaggcaatcctcacctcac 5440685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 34992597 - 34992631
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  34992597 gatagataagactcttgagaagagtttataaagag 34992631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 50338466 - 50338416
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||| || |||||||| |||| ||| |||||||||||    
T  50338466 gatagataagactcttgataagagtttatatagaggagacaatcttcacct 50338416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5440594 - 5440631
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  5440594 tcggatagacaagactcttgagaagagtttataaagag 5440631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9180385 - 9180422
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| || |||||||||||||||||||||||    
T  9180385 tcggatagataggattcttgagaaaagtttataaagag 9180422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9264173 - 9264136
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  9264173 tcggatagataagactcttgagaagagtatataaagag 9264136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9264587 - 9264550
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  9264587 tcggatagataagactcttgagaagagtatataaagag 9264550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10758855 - 10758798
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    |||||||||||||||||||||||| | | |||||| |||||| |||  ||||||||||    
T  10758855 tcggatagataagactcttgagaagattatataaatagaagacaatactcacctcaca 10758798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 11414388 - 11414433
Alignment:
Q  9 ataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  11414388 ataagactcttgagaagagtttataaagaggagacaatcctcacct 11414433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21832778 - 21832725
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||| |||||||||||||| ||||||||| ||| ||| |||| ||||||    
T  21832778 tcggatagacaagactcttgagaagagtttataaggaggagacaatcctcacct 21832725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29763783 - 29763746
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| || |||||||||||||    
T  29763783 tcggatagataagactcttgataagagtttataaagag 29763746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35015502 - 35015539
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  35015502 tcggatagataaaactcttgataaaagtttataaagag 35015539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37223592 - 37223629
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  37223592 tcggatagataagactcctgagaagagtttataaagag 37223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39078858 - 39078821
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39078858 tcggatagacaagactcttgagaagagtttataaagag 39078821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50692340 - 50692377
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  50692340 tcggatagacaagactcttgagaagagtttataaagag 50692377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51642722 - 51642685
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  51642722 tcggatagataagactcttgagaagagtatataaagag 51642685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54369056 - 54369093
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  54369056 tcggatagataggactcttgagaagagtttataaagag 54369093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19841507 - 19841543
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  19841507 tcggataaataagactcttgataaaagtttataaaga 19841543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2179671 - 2179725
Alignment:
Q  1 tcggatagataagactcttgagaaa-agtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  2179671 tcggatagataagactcttgagaaagagtttataaagaggagacaatcctcacct 2179725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6782843 - 6782880
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6782843 tcggatagataagactcttgagaagagtttataaagag 6782880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6783055 - 6783092
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6783055 tcggatagataagactcttgagaagagtttataaagag 6783092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9379017 - 9379054
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9379017 tcggatagataagactcttgagaagagtttataaagag 9379054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29252593 - 29252630
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29252593 tcggatagataagactcttgagaagagtttataaagag 29252630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1661278 - 1661241
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1661278 tcggatagataaaactcttgagaagagtttataaagag 1661241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7135330 - 7135293
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  7135330 tcggatagataggactcttgagaagagtttataaagag 7135293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9378814 - 9378847
Alignment:
Q  5 atagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||| |||||||||||||    
T  9378814 atagataagactcttgagaagagtttataaagag 9378847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31357762 - 31357709
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||||||||||||| || |||||||| |||| ||| |||| ||||||    
T  31357762 tcggatagataagactcttgataagagtttatatagaggagacaatcctcacct 31357709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31374782 - 31374819
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  31374782 tcggatagataagactattgagaagagtttataaagag 31374819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33833967 - 33834020
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||||||||||||| || |||||||| |||| ||| |||| ||||||    
T  33833967 tcggatagataagactcttgataagagtttatatagaggagacaatcctcacct 33834020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39808551 - 39808514
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39808551 tcggatagacaagactcttgagaagagtttataaagag 39808514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39808684 - 39808647
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  39808684 tcggatagacaagactcttgagaagagtttataaagag 39808647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47856078 - 47856041
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| || |||||||||||||    
T  47856078 tcggatagataagactcttgataagagtttataaagag 47856041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48114014 - 48114051
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| || |||||||||||||    
T  48114014 tcggatagataagactcttgataagagtttataaagag 48114051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 29780168 - 29780228
Alignment:
Q  5 atagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcacatgtcggt 65  Q
    ||||||| |||||||||||| ||||||||||||| ||| | || |||||| ||| ||||||    
T  29780168 atagatatgactcttgagaagagtttataaagaggagacactcctcaccttacaagtcggt 29780228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 76869 - 76906
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  76869 tcggatagataagactcttgagaagagtttataaagag 76906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5720954 - 5720917
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5720954 tcggatagataagactcttgagaagagtttataaagag 5720917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43599328 - 43599365
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43599328 tcggatagataagactcttgagaagagtttataaagag 43599365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9596306 - 9596267
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaa 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  9596306 tcggatagataagattcttgagaagagtttataaagagaa 9596267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25186789 - 25186835
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatc 47  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  25186789 tcggatagataagactcttgataaaagtttatatagaggagacaatc 25186835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3183998 - 3183961
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  3183998 tcggatagataggactcttgagaagagtttataaagag 3183961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8559598 - 8559635
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  8559598 tcggatagataagactcttgagaagagtatataaagag 8559635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10989328 - 10989291
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  10989328 tcggatagacaagactcttgagaagagtttataaagag 10989291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15011116 - 15011079
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  15011116 tcggatagacaagactcttgagaagagtttataaagag 15011079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35561683 - 35561720
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  35561683 tcggatagataagattcttgagaagagtttataaagag 35561720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40902480 - 40902443
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  40902480 tcggatagacaagactcttgagaagagtttataaagag 40902443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42228788 - 42228825
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  42228788 tcggatagacaagactcttgagaagagtttataaagag 42228825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43901104 - 43901051
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||||||||||||| || |||||||| |||| ||| |||| ||||||    
T  43901104 tcggatagataagactcttgataagagtttatatagaggagacaatcctcacct 43901051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3538035 - 3538071
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  3538035 tcggatagatatgactcttgagaagagtttataaaga 3538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20760747 - 20760711
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  20760747 tcggatagacaagactcttgagaagagtttataaaga 20760711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4905592 - 4905539
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| |||| ||||||    
T  4905592 tcggatagataagactcttgagaagagtgtataaagaggagacaatcctcacct 4905539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43943690 - 43943727
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43943690 tcggatagataagactcttgagaagagtttataaagag 43943727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45684261 - 45684208
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||| ||||||||| ||||||||||| |||||||| |||| ||||||    
T  45684261 tcggatagatacgactcttgataaaagtttatatagagaagacaatcctcacct 45684208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49380967 - 49380930
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  49380967 tcggatagataagactcttgagaagagtttataaagag 49380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 49380679 - 49380714
Alignment:
Q  3 ggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||| |||||||||||||    
T  49380679 ggatagataagactcttgagaagagtttataaagag 49380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 1923075 - 1923041
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  1923075 gatagataagactcttgagaagagtttataaagag 1923041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 29113469 - 29113503
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  29113469 gatagataagactcttgagaagagtttataaagag 29113503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39110924 - 39110970
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatc 47  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||    
T  39110924 tcggatagataagactcttgagaagagtatataaagaggagacaatc 39110970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 990564 - 990601
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  990564 tcggatagataacactcttgagaagagtttataaagag 990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4645869 - 4645906
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  4645869 tcggatagataagactcttgagaagagtatataaagag 4645906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5488384 - 5488421
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  5488384 tcggataaataagactcttgagaagagtttataaagag 5488421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12016770 - 12016733
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12016770 tcggatagacaagactcttgagaagagtttataaagag 12016733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12016978 - 12016941
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12016978 tcggatagacaagactcttgagaagagtttataaagag 12016941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21498548 - 21498601
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||| |||||||||||||| ||| ||||||||||||  |||| ||||||    
T  21498548 tcggatagacaagactcttgagaagagtatataaagagaaggtaatcctcacct 21498601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22867101 - 22867138
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  22867101 tcggatagataggactcttgagaagagtttataaagag 22867138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23018487 - 23018524
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  23018487 tcggatagatatgactcttgagaagagtttataaagag 23018524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27634413 - 27634376
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  27634413 tcggatagataagactcttgagaagagtatataaagag 27634376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28497301 - 28497264
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| || |||||||||||||    
T  28497301 tcggatagataagactcttgataagagtttataaagag 28497264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35269028 - 35269065
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  35269028 tcggatagataagattcttgagaagagtttataaagag 35269065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43972372 - 43972409
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  43972372 tcggatagataggactcttgagaaaagttgataaagag 43972409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49544349 - 49544386
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  49544349 tcggatagataagattcttgagaagagtttataaagag 49544386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51469498 - 51469535
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  51469498 tcggatagataggactcttgagaagagtttataaagag 51469535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52810712 - 52810675
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  52810712 tcggatagataagattcttgagaagagtttataaagag 52810675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 53738291 - 53738258
Alignment:
Q  5 atagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||| |||||||||||||    
T  53738291 atagataagactcttgagaagagtttataaagag 53738258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11590437 - 11590494
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    ||||||||| |||||||||||||| ||||||||||||| ||  |||| ||||||||||    
T  11590437 tcggatagacaagactcttgagaagagtttataaagaggaggcaatcctcacctcaca 11590494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13959419 - 13959456
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  13959419 tcggatagataagactcttgagaagagtttataaagag 13959456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15391765 - 15391802
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  15391765 tcggatagataagactcttgagaaaagtatataaagag 15391802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39649171 - 39649134
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  39649171 tcggatagataagactcttgagaagagtttataaagag 39649134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 11018880 - 11018928
Alignment:
Q  10 taagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    ||||||||||||||| ||||||||||||| ||| ||||||| |||||||    
T  11018880 taagactcttgagaagagtttataaagaggagacaatcttcccctcaca 11018928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 15013545 - 15013583
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagagaaga 42  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  15013545 gatagatatgactcttgagaacagtttataaagagaaga 15013583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 38871239 - 38871205
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||| ||||||||||||||||    
T  38871239 gatagataagactcttgataaaagtttataaagag 38871205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 39648962 - 39648928
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  39648962 gatagataagactcttgagaagagtttataaagag 39648928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2697418 - 2697381
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  2697418 tcggatagataggactcttgagaagagtttataaagag 2697381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4022212 - 4022175
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  4022212 tcggatagataggactcttgagaagagtttataaagag 4022175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15391836 - 15391873
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  15391836 tcggatagataagactcttgagaagagtatataaagag 15391873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15392042 - 15392079
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  15392042 tcggatagataagactcttgagaagagtatataaagag 15392079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22826832 - 22826779
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacct 54  Q
    ||||||||||||||||||||| || |||||||| |||| ||| |||| ||||||    
T  22826832 tcggatagataagactcttgataagagtttatatagaggagacaatcctcacct 22826779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24382238 - 24382181
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagagaagaaaatcttcacctcaca 58  Q
    |||||||||||||||||||||||| | ||| |||  || ||| |||||||||||||||    
T  24382238 tcggatagataagactcttgagaagaatttttaataaggagacaatcttcacctcaca 24382181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40521580 - 40521543
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  40521580 tcggatagataagattcttgagaagagtttataaagag 40521543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43361639 - 43361602
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  43361639 tcggatagacaagactcttgagaagagtttataaagag 43361602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43361844 - 43361807
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  43361844 tcggatagacaagactcttgagaagagtttataaagag 43361807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43423296 - 43423333
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  43423296 tcggatagataacactcttgagaagagtttataaagag 43423333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48558408 - 48558371
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  48558408 tcggatagataagactcttgagaagagtatataaagag 48558371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52846936 - 52846899
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  52846936 tcggatagataagactcttgagaagagtatataaagag 52846899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2997348 - 2997312
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaaga 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  2997348 tcggatagataagactcttgagaagagtatataaaga 2997312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1112 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1112
Description:

Target: scaffold1112; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 1319 - 1281
Alignment:
Q  4 gatagataagactcttgagaaaagtttataaagagaaga 42  Q
    |||||||||||||||||| || |||||||||||||||||    
T  1319 gatagataagactcttgataagagtttataaagagaaga 1281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3034 - 2997
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  3034 tcggatagacaagactcttgagaagagtttataaagag 2997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13323 - 13360
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  13323 tcggatagacaagactcttgagaagagtttataaagag 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13530 - 13567
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  13530 tcggatagacaagactcttgagaagagtttataaagag 13567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21350 - 21313
Alignment:
Q  1 tcggatagataagactcttgagaaaagtttataaagag 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  21350 tcggatagacaagactcttgagaagagtttataaagag 21313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University