View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_17 (Length: 488)

Name: NF3173_high_17
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_17
NF3173_high_17
[»] chr4 (8 HSPs)
chr4 (144-321)||(1390680-1390860)
chr4 (410-480)||(1390865-1390935)
chr4 (84-148)||(1359539-1359603)
chr4 (85-148)||(1390489-1390552)
chr4 (18-76)||(1390397-1390455)
chr4 (310-399)||(45645951-45646040)
chr4 (95-130)||(45645613-45645648)
chr4 (197-249)||(45645847-45645899)
[»] chr5 (8 HSPs)
chr5 (174-399)||(34666319-34666547)
chr5 (309-399)||(34646763-34646853)
chr5 (310-394)||(19648706-19648790)
chr5 (95-130)||(34646414-34646449)
chr5 (95-130)||(34666108-34666143)
chr5 (197-275)||(19648822-19648900)
chr5 (95-132)||(19649094-19649131)
chr5 (174-253)||(34646625-34646707)
[»] chr8 (8 HSPs)
chr8 (309-399)||(14192654-14192744)
chr8 (197-413)||(14201545-14201755)
chr8 (325-435)||(14183738-14183851)
chr8 (325-399)||(40718477-40718551)
chr8 (88-130)||(40718111-40718153)
chr8 (88-132)||(14183354-14183398)
chr8 (203-276)||(14183601-14183674)
chr8 (205-265)||(40718360-40718420)
[»] chr6 (2 HSPs)
chr6 (326-396)||(34303447-34303517)
chr6 (316-398)||(33888832-33888914)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 144 - 321
Target Start/End: Original strand, 1390680 - 1390860
Alignment:
Q  144 tggtattttaaacctttgttattcatttgcatcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctatt 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||| |||||||||||||||||||||| ||||||    
T  1390680 tggtattttaaacctttgttattcatttgcatcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctatt 1390779  T
Q  241 agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaagtcatctttgggaat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1390780 agcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaaggcatctttgggaat 1390860  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 1390865 - 1390935
Alignment:
Q  410 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390865 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 1390935  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 1359539 - 1359603
Alignment:
Q  84 aataacattgaaagcatttagtgttggaaacaaaagagtagaatttgaaaagcaatcaaatggta 148  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  1359539 aataacattgaaagcatttagtgttggaaacaaaatagtggaatttgaaaagcaatcaaatggta 1359603  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 1390489 - 1390552
Alignment:
Q  85 ataacattgaaagcatttagtgttggaaacaaaagagtagaatttgaaaagcaatcaaatggta 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  1390489 ataacattgaaagcatttagtgttggaaacaaaagagtagaattttcaaagcaatcaaatggta 1390552  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 1390397 - 1390455
Alignment:
Q  18 ggaaatggacccatgtctcttataaatcaattgggttcatcaattggagaagctgctat 76  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  1390397 ggaaatggacccgtgtctcttataaatcaattgggttcatcaattggtgaagctgctat 1390455  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 45645951 - 45646040
Alignment:
Q  310 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 399  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||  ||  ||||| ||||| |||| |||||||||||||    
T  45645951 atctttggtaacttggctcaacaaaatttgttggttggttgtgatcttcaacaaggaacagtgtcctttaaacctactgattgtaccaaa 45646040  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 45645613 - 45645648
Alignment:
Q  95 aagcatttagtgttggaaacaaaagagtagaatttg 130  Q
    ||||||||||||||||||||||||||||||||||||    
T  45645613 aagcatttagtgttggaaacaaaagagtagaatttg 45645648  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 45645847 - 45645899
Alignment:
Q  197 tcactgcacattttcaaggtgcagatattaagttgcattctattagcaccttt 249  Q
    |||| ||||||||| ||||||| ||| || |||||||||||||||| ||||||    
T  45645847 tcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt 45645899  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 399
Target Start/End: Original strand, 34666319 - 34666547
Alignment:
Q  174 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggtt 270  Q
    |||||||||| ||||||||||| |   ||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| | || | |||||  ||    
T  34666319 atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtatt 34666418  T
Q  271 gtttgtttggctcttgtcccatctcgaatcaataaagt--catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaat 368  Q
    ||||| || ||| |    |||||||   ||||    ||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||     
T  34666419 gtttgctttgctttccaaccatctcc--tcaacttggttccatctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaac 34666516  T
Q  369 tgtgtcttttaagcctattgattgtaccaaa 399  Q
     ||||| ||||| |||| |||||||||||||    
T  34666517 agtgtcgtttaaacctactgattgtaccaaa 34666547  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 34646763 - 34646853
Alignment:
Q  309 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 399  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  34646763 catctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaa 34646853  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 19648790 - 19648706
Alignment:
Q  310 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgta 394  Q
    |||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  19648790 atctttggaaacttggcacaactaaatttgttggttggttatgatcttcaacaaaatattgtgtcgtttaagcctagtgattgta 19648706  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 34646414 - 34646449
Alignment:
Q  95 aagcatttagtgttggaaacaaaagagtagaatttg 130  Q
    ||||||||||||||||||||||||||||||||||||    
T  34646414 aagcatttagtgttggaaacaaaagagtagaatttg 34646449  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 34666108 - 34666143
Alignment:
Q  95 aagcatttagtgttggaaacaaaagagtagaatttg 130  Q
    ||||||||||||||||||||||||||||||||||||    
T  34666108 aagcatttagtgttggaaacaaaagagtagaatttg 34666143  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 19648900 - 19648822
Alignment:
Q  197 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttg 275  Q
    |||||||||||||| |||||||||||||||||||| |  | ||||| ||||||| ||| ||||| ||||| || |||||    
T  19648900 tcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttg 19648822  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 19649131 - 19649094
Alignment:
Q  95 aagcatttagtgttggaaacaaaagagtagaatttgaa 132  Q
    |||||||||||||||||||||||||| |||||||||||    
T  19649131 aagcatttagtgttggaaacaaaagaatagaatttgaa 19649094  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 34646625 - 34646707
Alignment:
Q  174 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttc 253  Q
    |||||||||| ||||||||||| |   ||| | ||||||| ||||||| ||| || |||||||||||||||| ||||||||||    
T  34646625 atcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattagtacctttgttc 34646707  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 14192654 - 14192744
Alignment:
Q  309 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 399  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  14192654 catctttggaaatttggctcagcaaaatttgatggttggttatgatcttcagcaaaaaattgtgtcctttaaacctagtgattgtaccaaa 14192744  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 413
Target Start/End: Original strand, 14201545 - 14201755
Alignment:
Q  197 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcg 296  Q
    |||||||||||||| |||||||||||||||| ||| ||| |||||| |||||| || ||||| | |||||| |||  || |||||| || |||||||||     
T  14201545 tcactgcacattttaaaggtgcagatattaaattgtattatattagtacctttattaaagtttctgatgggattgcatgcttggcttttatcccatctca 14201644  T
Q  297 aatcaataaagtcatctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 396  Q
    ||       || ||||||||| ||  |||||||||| |||||||||||||||||| |||||   ||||| | |||  | ||||||||| |||||||||||    
T  14201645 aac------agccatctttggaaacgtggctcaacagaatttgttggttggttataatcttgttcaaaatactgttacatttaagcctgttgattgtacc 14201738  T
Q  397 aaaccatattgagtgta 413  Q
    || ||||||||| ||||    
T  14201739 aagccatattgaatgta 14201755  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 435
Target Start/End: Original strand, 14183738 - 14183851
Alignment:
Q  325 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaaccatattgag---tgtagactttgt 421  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||   || || |   ||||||||||||    
T  14183738 gctcagcagaatttgttggttggttatgatcttcaacaaaaaattgtgtcgtttaagcctactgattgtagcaaagtgtaatgggtgttgtagactttgt 14183837  T
Q  422 ttactttactcctt 435  Q
    ||||||| ||||||    
T  14183838 ttactttcctcctt 14183851  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 40718477 - 40718551
Alignment:
Q  325 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 399  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||| ||||    
T  40718477 gctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaa 40718551  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 40718111 - 40718153
Alignment:
Q  88 acattgaaagcatttagtgttggaaacaaaagagtagaatttg 130  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  40718111 acattggaagcatttagtgttggaaacaaaagaatagaatttg 40718153  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 14183354 - 14183398
Alignment:
Q  88 acattgaaagcatttagtgttggaaacaaaagagtagaatttgaa 132  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||    
T  14183354 acattggaagcatttagtgttggtaacaaaagaatagaatttgaa 14183398  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 14183601 - 14183674
Alignment:
Q  203 cacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgt 276  Q
    |||||||| ||||||| ||| ||||||||||| ||||||| || |||||| | ||||| |||||  ||||||||    
T  14183601 cacattttaaaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgt 14183674  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 40718360 - 40718420
Alignment:
Q  205 cattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatg 265  Q
    |||||| ||||||| ||||||||||||||| | ||||| |||||||||   ||||||||||    
T  40718360 cattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatg 40718420  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 34303447 - 34303517
Alignment:
Q  326 ctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 396  Q
    |||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||||    
T  34303447 ctcaacaagatttcatggttggttatgaccttcaacaaaaaactgtgtcttttaagtctgtagattgtacc 34303517  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 33888914 - 33888832
Alignment:
Q  316 gggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaa 398  Q
    ||||| ||||| ||||| || ||||| ||||||||||| || ||| |||| ||| | |||||||||||||||||||| |||||    
T  33888914 gggaacttggcacaacataacttgttagttggttatgacctacaaaaaaatattatctcttttaagcctattgattgcaccaa 33888832  T

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