View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_18 (Length: 472)

Name: NF3173_high_18
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_18
NF3173_high_18
[»] chr8 (4 HSPs)
chr8 (20-464)||(7099570-7100014)
chr8 (162-281)||(33079672-33079792)
chr8 (399-440)||(163440-163481)
chr8 (410-450)||(41383496-41383536)
[»] chr3 (7 HSPs)
chr3 (410-450)||(27421405-27421445)
chr3 (47-200)||(41163107-41163263)
chr3 (410-450)||(53917125-53917165)
chr3 (406-444)||(24933178-24933216)
chr3 (410-463)||(15830649-15830702)
chr3 (410-450)||(456674-456714)
chr3 (410-450)||(3315449-3315489)
[»] chr6 (3 HSPs)
chr6 (409-450)||(15534052-15534093)
chr6 (410-450)||(3395184-3395224)
chr6 (410-444)||(17012857-17012891)
[»] chr2 (2 HSPs)
chr2 (410-450)||(6263605-6263645)
chr2 (410-450)||(28569876-28569916)
[»] chr1 (5 HSPs)
chr1 (410-450)||(6996372-6996412)
chr1 (410-443)||(16429743-16429776)
chr1 (407-447)||(17346160-17346200)
chr1 (410-450)||(25250732-25250772)
chr1 (410-450)||(31736927-31736967)
[»] scaffold0133 (1 HSPs)
scaffold0133 (410-444)||(26341-26375)
[»] chr7 (5 HSPs)
chr7 (406-447)||(3786606-3786647)
chr7 (410-450)||(7351102-7351142)
chr7 (410-450)||(20298112-20298152)
chr7 (410-450)||(28486362-28486402)
chr7 (410-450)||(38394783-38394823)
[»] scaffold1674 (1 HSPs)
scaffold1674 (410-450)||(903-943)
[»] scaffold0005 (1 HSPs)
scaffold0005 (410-450)||(50806-50846)
[»] scaffold0004 (1 HSPs)
scaffold0004 (410-450)||(80654-80694)
[»] chr5 (5 HSPs)
chr5 (410-450)||(658806-658846)
chr5 (410-450)||(18510865-18510905)
chr5 (410-450)||(20043772-20043812)
chr5 (410-450)||(25806249-25806289)
chr5 (410-450)||(27911220-27911260)
[»] chr4 (2 HSPs)
chr4 (410-450)||(14788884-14788924)
chr4 (410-450)||(22802188-22802228)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 7099570 - 7100014
Alignment:
Q  20 gaaacacatttgaaataccttggttagtgagatcttattagtggtaggatcaaagatttctctcttgttttctcttgggatctctaggacggttcaatgg 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  7099570 gaaacacatttcaaataccttggttagtgagatcttattagtggcgggatcaaagatttctctcttgttttctcttaggatctctacgacggttcaatgg 7099669  T
Q  120 cttgatgaatgggtaaaattattgattgttgtttgtgaccttttggatctaatttcttgtaacctcatgtatcactcattttatagaagattgtggagtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||    
T  7099670 cttgatgaatgggtaaaattattgattgttgtttgtgaccttttggatctaatttcgtgtaacctcatgtatcactcattttatagaggactgcggagtt 7099769  T
Q  220 actctctccccccatacataggtcatattaggttgagttgggtaaacaaccatcgatgtgttttacttcaatatttcttaggcaacaaactcaataagag 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099770 actctctccccccatacataggtcatattaggttgagttgggtaaacaatcatcgatgtgttttacttcaatatttcttaggcaacaaactcaataagag 7099869  T
Q  320 taataatatatcctcatcatcaaaatttacttcaatatttttagatcatcaataaatttgttcaattgtgtaggttgttccactaaagattttgactcta 419  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7099870 taataatatatcctcatcatcaaaatttacttcaatatttttatatcatcaataaatttgttcaattgcgtaggttgttccactaaagattttgactcta 7099969  T
Q  420 ccatcttaaatgagtaaagttgttgttttagacatagcctatgat 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7099970 ccatcttaaatgagtaaagttgttgttttagacatagcctatgat 7100014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 33079792 - 33079672
Alignment:
Q  162 ttggatctaatttcttgtaacct-catgtatcactcattttatagaagattgtggagttactctctccccccatacataggtcatattaggttgagttgg 260  Q
    ||||||||||||||||||||||| | ||||||||| |||| ||||  |||||  ||| |  |||||||||||| |  ||||||||||| ||| ||  |||    
T  33079792 ttggatctaatttcttgtaacctccttgtatcactaatttcatagtggattggagagctgatctctccccccagatgtaggtcatattgggtcgaactgg 33079693  T
Q  261 gtaaacaaccatcgatgtgtt 281  Q
    || ||||| ||| ||||||||    
T  33079692 gttaacaagcattgatgtgtt 33079672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 163440 - 163481
Alignment:
Q  399 ccactaaagattttgactctaccatcttaaatgagtaaagtt 440  Q
    |||||| |||||||||||||||||||| |||||| |||||||    
T  163440 ccactatagattttgactctaccatctgaaatgaataaagtt 163481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 41383536 - 41383496
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  41383536 tttgactttaccatctcaaatgagtaaagttgttgctttag 41383496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 27421445 - 27421405
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27421445 tttgactctaccatcttgaatgagtaaagttgttgttttag 27421405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 41163107 - 41163263
Alignment:
Q  47 tgagatcttattagtggtaggatcaaagatttctctcttgttttctcttgggatctctaggacgg-ttcaatggcttgatgaatgggt-aaaattattga 144  Q
    |||||||| ||||| || |||| ||||| |||||||||||||||||||  ||||||||| |  || || | || |||||| | |||||  ||||||  |     
T  41163107 tgagatctcattagaggaaggaccaaagctttctctcttgttttctctcaggatctctatgtgggtttgagtgacttgataactgggtcgaaattagggt 41163206  T
Q  145 ttgttgtttgtgaccttttggatctaatttcttgtaacctc-atgtatcactcattt 200  Q
    ||||| ||| ||| |||||||||||||||| ||| ||||||  ||||||||||||||    
T  41163207 ttgttctttatgagcttttggatctaattttttggaacctctttgtatcactcattt 41163263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 53917125 - 53917165
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  53917125 tttgactttaccatcttaaatgagtaaagttgttgctttag 53917165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 24933216 - 24933178
Alignment:
Q  406 agattttgactctaccatcttaaatgagtaaagttgttg 444  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  24933216 agattttgactttaccatcttgaatgagtaaagttgttg 24933178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 15830649 - 15830702
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttagacatagcctatga 463  Q
    |||||||| |||||||||||||||||||||| ||| |||||  || ||||||||    
T  15830649 tttgactccaccatcttaaatgagtaaagttcttgctttaggaattgcctatga 15830702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 456714 - 456674
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  456714 tttgactctaccatcttgaatgagtagagttgttgctttag 456674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 3315489 - 3315449
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  3315489 tttgactctaccatcttgaatgaataaagttgttgctttag 3315449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 450
Target Start/End: Original strand, 15534052 - 15534093
Alignment:
Q  409 ttttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  15534052 ttttgactctaccatcttgaatgagtaaagttgttgctttag 15534093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 3395224 - 3395184
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  3395224 tttgactctaccatcttgaatgagtaaagttgttgctttag 3395184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Complemental strand, 17012891 - 17012857
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttg 444  Q
    ||||||||||||||||| |||||||||||||||||    
T  17012891 tttgactctaccatcttgaatgagtaaagttgttg 17012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 6263605 - 6263645
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  6263605 tttgactctaccatcttgaatgagtaaagttgttgctttag 6263645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 28569876 - 28569916
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  28569876 tttgactctaccatcttgaatgagtaaagtttttgttttag 28569916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 6996412 - 6996372
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  6996412 tttgactttaccatcttaaatgagtaaagttgttgctttag 6996372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 16429776 - 16429743
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgtt 443  Q
    ||||||||||||||||| ||||||||||||||||    
T  16429776 tttgactctaccatcttgaatgagtaaagttgtt 16429743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 17346200 - 17346160
Alignment:
Q  407 gattttgactctaccatcttaaatgagtaaagttgttgttt 447  Q
    ||||| |||||||||||||| |||||||| |||||||||||    
T  17346200 gatttagactctaccatcttgaatgagtagagttgttgttt 17346160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 25250732 - 25250772
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  25250732 tttgactctaccatcttgaatgagtagagttgttgctttag 25250772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 31736927 - 31736967
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  31736927 tttgactttaccatcttgaatgagtaaagttgttgctttag 31736967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Original strand, 26341 - 26375
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttg 444  Q
    ||||||||||||||||| |||||||||||||||||    
T  26341 tttgactctaccatcttgaatgagtaaagttgttg 26375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 3786647 - 3786606
Alignment:
Q  406 agattttgactctaccatcttaaatgagtaaagttgttgttt 447  Q
    ||||||||||  | ||||||||||||||||||||||||||||    
T  3786647 agattttgacgatgccatcttaaatgagtaaagttgttgttt 3786606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 7351102 - 7351142
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  7351102 tttgactctaccatcttgaatgagtagagttgttgctttag 7351142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 20298152 - 20298112
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  20298152 tttgactttaccatcttgaatgagtaaagttgttgctttag 20298112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 28486402 - 28486362
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  28486402 tttgactttaccatcttgaatgagtaaagttgttgctttag 28486362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 38394823 - 38394783
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  38394823 tttgactctaccatcttgaatgagtagagttgttgctttag 38394783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 903 - 943
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  903 tttgactttaccatcttgaatgagtaaagttgttgctttag 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 50846 - 50806
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  50846 tttgactttaccatcttgaatgagtaaagttgttgctttag 50806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 80694 - 80654
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  80694 tttgactttaccatcttgaatgagtaaagttgttgctttag 80654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 658846 - 658806
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  658846 tttgactttaccatcttgaatgagtaaagttgttgctttag 658806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 18510865 - 18510905
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  18510865 tttgactttaccatcttgaatgagtaaagttgttgctttag 18510905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 20043812 - 20043772
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||||| ||||||| ||||||||||||||||| |||||    
T  20043812 tttgactctgccatcttgaatgagtaaagttgttgctttag 20043772  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 25806289 - 25806249
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  25806289 tttgactttaccatcttgaatgagtaaagttgttgctttag 25806249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 27911260 - 27911220
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  27911260 tttgactttaccatcttgaatgagtaaagttgttgctttag 27911220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 14788884 - 14788924
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  14788884 tttgactttaccatcttgaatgagtaaagttgttgctttag 14788924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 22802188 - 22802228
Alignment:
Q  410 tttgactctaccatcttaaatgagtaaagttgttgttttag 450  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    
T  22802188 tttgactttaccatcttgaatgagtaaagttgttgctttag 22802228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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