View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_19 (Length: 466)

Name: NF3173_high_19
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_19
NF3173_high_19
[»] chr4 (24 HSPs)
chr4 (313-456)||(47668162-47668303)
chr4 (1-118)||(47668531-47668648)
chr4 (317-456)||(6615853-6615993)
chr4 (1-118)||(6616145-6616262)
chr4 (25-103)||(86892-86970)
chr4 (36-118)||(29687912-29687994)
chr4 (1-118)||(39592223-39592340)
chr4 (18-118)||(35787878-35787978)
chr4 (152-215)||(47668442-47668505)
chr4 (27-118)||(6140294-6140385)
chr4 (25-118)||(11094615-11094706)
chr4 (36-102)||(43894205-43894271)
chr4 (38-118)||(2293459-2293539)
chr4 (19-106)||(38418963-38419050)
chr4 (19-113)||(44159168-44159262)
chr4 (36-118)||(44302820-44302902)
chr4 (36-117)||(36604776-36604857)
chr4 (152-215)||(11094739-11094802)
chr4 (152-215)||(52980199-52980262)
chr4 (152-214)||(29687817-29687879)
chr4 (18-117)||(34438488-34438587)
chr4 (152-215)||(39592128-39592190)
chr4 (25-117)||(17494216-17494308)
chr4 (18-82)||(30682997-30683061)
[»] chr3 (17 HSPs)
chr3 (338-456)||(47765875-47765990)
chr3 (1-115)||(47765503-47765617)
chr3 (152-215)||(47765654-47765717)
chr3 (27-118)||(53808409-53808500)
chr3 (19-118)||(11219513-11219612)
chr3 (36-106)||(17350048-17350118)
chr3 (36-117)||(7483460-7483541)
chr3 (36-118)||(34902928-34903010)
chr3 (36-106)||(39133117-39133187)
chr3 (18-118)||(8371302-8371402)
chr3 (152-215)||(34902832-34902895)
chr3 (36-118)||(32979188-32979270)
chr3 (152-215)||(53808533-53808596)
chr3 (36-118)||(12062318-12062400)
chr3 (52-106)||(31638234-31638290)
chr3 (152-215)||(8371435-8371498)
chr3 (27-118)||(23559910-23560001)
[»] chr6 (11 HSPs)
chr6 (1-118)||(18139421-18139538)
chr6 (338-445)||(18139052-18139159)
chr6 (38-118)||(33801951-33802031)
chr6 (152-214)||(18139325-18139387)
chr6 (27-118)||(14328708-14328799)
chr6 (27-118)||(14421718-14421809)
chr6 (41-102)||(13507121-13507182)
chr6 (36-118)||(293574-293656)
chr6 (36-84)||(2130883-2130931)
chr6 (152-192)||(33801878-33801918)
chr6 (36-118)||(31738463-31738545)
[»] scaffold1974 (1 HSPs)
scaffold1974 (1-118)||(562-679)
[»] scaffold1878 (1 HSPs)
scaffold1878 (1-118)||(595-712)
[»] scaffold0290 (1 HSPs)
scaffold0290 (1-118)||(9412-9529)
[»] chr7 (18 HSPs)
chr7 (25-118)||(14109005-14109098)
chr7 (25-118)||(14418962-14419055)
chr7 (18-118)||(38406100-38406199)
chr7 (37-117)||(24494986-24495066)
chr7 (55-118)||(4167570-4167633)
chr7 (18-82)||(4857283-4857347)
chr7 (152-192)||(18801430-18801470)
chr7 (152-192)||(19848695-19848735)
chr7 (51-118)||(40930533-40930600)
chr7 (36-118)||(46458647-46458729)
chr7 (55-118)||(18801334-18801397)
chr7 (55-118)||(19848768-19848831)
chr7 (36-118)||(25154870-25154952)
chr7 (19-84)||(26406208-26406273)
chr7 (27-84)||(27899182-27899239)
chr7 (152-192)||(14108932-14108972)
chr7 (152-192)||(14418889-14418929)
chr7 (152-192)||(38406232-38406272)
[»] chr8 (30 HSPs)
chr8 (18-118)||(117130-117230)
chr8 (36-118)||(10052204-10052286)
chr8 (27-118)||(36756155-36756246)
chr8 (36-117)||(21670164-21670245)
chr8 (25-118)||(39546611-39546704)
chr8 (36-117)||(44103231-44103312)
chr8 (18-118)||(13366984-13367084)
chr8 (152-215)||(13363416-13363479)
chr8 (36-118)||(7486177-7486259)
chr8 (37-118)||(21267233-21267314)
chr8 (25-118)||(37276177-37276270)
chr8 (18-118)||(2421227-2421327)
chr8 (18-106)||(36938763-36938851)
chr8 (19-118)||(19913575-19913674)
chr8 (36-118)||(13363512-13363594)
chr8 (36-106)||(21961923-21961993)
chr8 (35-116)||(12281716-12281797)
chr8 (36-117)||(13513520-13513601)
chr8 (36-117)||(13603053-13603134)
chr8 (152-214)||(10052319-10052381)
chr8 (36-118)||(35944008-35944090)
chr8 (152-214)||(39546516-39546578)
chr8 (28-118)||(44606231-44606321)
chr8 (338-413)||(39546257-39546329)
chr8 (18-118)||(36070260-36070360)
chr8 (27-118)||(20308696-20308787)
chr8 (27-118)||(21095329-21095420)
chr8 (152-215)||(36756279-36756343)
chr8 (153-215)||(117263-117325)
chr8 (19-108)||(41522632-41522721)
[»] chr1 (24 HSPs)
chr1 (26-118)||(9633865-9633957)
chr1 (36-114)||(49141434-49141512)
chr1 (37-118)||(44977322-44977403)
chr1 (38-118)||(51218900-51218980)
chr1 (152-215)||(30551427-30551490)
chr1 (152-215)||(37624408-37624471)
chr1 (36-118)||(23082060-23082142)
chr1 (36-118)||(50678463-50678545)
chr1 (36-117)||(27689383-27689464)
chr1 (27-116)||(52742912-52743001)
chr1 (18-118)||(8092680-8092780)
chr1 (36-112)||(22766760-22766836)
chr1 (160-215)||(27689510-27689565)
chr1 (36-118)||(30551523-30551605)
chr1 (18-118)||(21277076-21277176)
chr1 (27-106)||(14764320-14764399)
chr1 (27-118)||(26056081-26056172)
chr1 (36-118)||(37624504-37624586)
chr1 (18-118)||(51726778-51726878)
chr1 (152-215)||(23081964-23082027)
chr1 (18-117)||(36509893-36509992)
chr1 (25-62)||(40811284-40811321)
chr1 (51-115)||(14169734-14169798)
chr1 (45-117)||(19466140-19466212)
[»] chr2 (22 HSPs)
chr2 (27-118)||(12852977-12853068)
chr2 (36-117)||(14714592-14714673)
chr2 (36-117)||(4512206-4512287)
chr2 (25-118)||(29424546-29424639)
chr2 (18-118)||(23177756-23177856)
chr2 (18-118)||(23589013-23589113)
chr2 (37-117)||(26205114-26205194)
chr2 (55-118)||(7983629-7983692)
chr2 (152-215)||(41296292-41296355)
chr2 (41-118)||(45047447-45047524)
chr2 (18-118)||(14509291-14509391)
chr2 (51-118)||(3528199-3528266)
chr2 (36-118)||(21010432-21010514)
chr2 (163-215)||(14714718-14714770)
chr2 (55-106)||(3532313-3532364)
chr2 (19-118)||(10367322-10367421)
chr2 (160-215)||(21010336-21010391)
chr2 (51-118)||(25570804-25570871)
chr2 (36-118)||(37868974-37869056)
chr2 (36-118)||(41296388-41296470)
chr2 (1-118)||(12959639-12959756)
chr2 (27-111)||(4829556-4829640)
[»] scaffold0025 (2 HSPs)
scaffold0025 (9-118)||(56634-56743)
scaffold0025 (330-422)||(56254-56340)
[»] chr5 (13 HSPs)
chr5 (18-118)||(2167449-2167548)
chr5 (55-118)||(7426760-7426823)
chr5 (36-118)||(18693798-18693880)
chr5 (27-118)||(5383033-5383124)
chr5 (51-118)||(21387752-21387819)
chr5 (27-118)||(32734222-32734313)
chr5 (19-118)||(40058101-40058200)
chr5 (19-84)||(22819485-22819550)
chr5 (19-118)||(19525222-19525321)
chr5 (18-117)||(42510196-42510295)
chr5 (19-113)||(12830877-12830971)
chr5 (19-113)||(12862857-12862951)
chr5 (52-92)||(7345350-7345390)
[»] scaffold0084 (1 HSPs)
scaffold0084 (36-106)||(13150-13220)
[»] scaffold0098 (1 HSPs)
scaffold0098 (51-106)||(41023-41078)
[»] scaffold0015 (1 HSPs)
scaffold0015 (36-106)||(207744-207814)
[»] scaffold0122 (1 HSPs)
scaffold0122 (25-118)||(16034-16127)
[»] scaffold0045 (1 HSPs)
scaffold0045 (26-114)||(77117-77207)
[»] scaffold0051 (1 HSPs)
scaffold0051 (36-118)||(39835-39917)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 47668303 - 47668162
Alignment:
Q  313 aatactctaatcatcatcaaca-catcaacaacaatgaagaaacaacaatagcaaatcaaattcaaccattcttctttgctctctttcatcatcatcatc 411  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||    
T  47668303 aatactctaatcatcatcaacaacagcaacaacaatgaagcaacaacaatagcaaatcaaattcaacc---cttttttgctctctttcatcatcatcatc 47668207  T
Q  412 atgaactaaaattataagagaaaaaacaagtgtttaggttctgtg 456  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  47668206 atgaattaaaattataagagaaaaaagaagtgtttaggttctgtg 47668162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 47668648 - 47668531
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    ||||||| |||| ||||||| || ||||||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  47668648 tcaaattggtcccttatatcatctgccgtttattgttttggtcctctctgttagtttttaacatcaaatatctaaggtaaaccatggttaaagatggtcc 47668549  T
Q  101 accatagaccttattaaa 118  Q
    |||||||||||| |||||    
T  47668548 accatagacctttttaaa 47668531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 317 - 456
Target Start/End: Complemental strand, 6615993 - 6615853
Alignment:
Q  317 ctctaatcatcatcaacacatcaacaaca--atgaagaa--acaacaatagcaaatcaaattcaaccattcttctttgctctctttcatcatcatcatca 412  Q
    |||||||||||||||||||||||||||||  |  || ||  ||| ||||||||||||||||||||||   ||| ||||||||||||||||||||||||||    
T  6615993 ctctaatcatcatcaacacatcaacaacagcagcaacaacaacagcaatagcaaatcaaattcaacc---cttttttgctctctttcatcatcatcatca 6615897  T
Q  413 tgaactaaaattataagagaaaaaacaagtgtttaggttctgtg 456  Q
    |||| ||||||||||||||||||||  |||||||||||| ||||    
T  6615896 tgaattaaaattataagagaaaaaaggagtgtttaggttatgtg 6615853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6616262 - 6616145
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    ||||||| |||| |||||| ||| | ||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| ||  |||||||| ||||    
T  6616262 tcaaattggtcccttatatattctgtcgtttattgttttggtcctctcctttagtttttaacatcaaatgtcaaaggtgaacaatgattaaagatagtcc 6616163  T
Q  101 accatagaccttattaaa 118  Q
    || |||||||||||||||    
T  6616162 actatagaccttattaaa 6616145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 86892 - 86970
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccacc 103  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||  |||||| |||||||||    
T  86892 gccgtttactgttttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccacc 86970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 29687994 - 29687912
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||||| ||||||||||||||||||| |||| || |||||||| |||||| ||||||||| || |||||||||||    
T  29687994 ttttggtcatctcctttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaaccttattaaa 29687912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39592340 - 39592223
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    ||||||| |||| |||| ||||| | |||||| |||||||||  ||||| ||| ||||||||||||||| |||||||||| ||||  |||||| ||||||    
T  39592340 tcaaattggtccattatgtcttctgtcgtttactgttttggttctctccgttaatttttaacatcaaatgtctaaggtgagccatgtttaaaggtggtcc 39592241  T
Q  101 accatagaccttattaaa 118  Q
    | |||| |||||||||||    
T  39592240 atcatataccttattaaa 39592223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 35787878 - 35787978
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| | ||||||  ||||||||| ||||| ||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||||| |||||||    
T  35787878 atcttctgtcgtttaccgttttggtcctctccgttagtttttaacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccatagactttattaa 35787977  T
Q  118 a 118  Q
    |    
T  35787978 a 35787978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 47668505 - 47668442
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||    
T  47668505 aaaagaggattgttcgatcatgtagggtctattgtattttagtgtgaaccactaacatttaata 47668442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 6140385 - 6140294
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||| ||| |||||||||||| | |||||||||||||||||||   ||| || | ||||||||||||||||||||||    
T  6140385 cgtttactattttggtcatttccgttagtttttaaccttaaatatctaaggtgaaccaactttataggtagtccaccatagaccttattaaa 6140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 11094615 - 11094706
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| |||||||||| ||| | ||||||||||||||||||| ||||||||  |||||  |||||  |||| |||||||||||||||||||    
T  11094615 gccgtttactgttttggtcctcttcgttagtttttaacatcaaatgtctaaggt--accatgtttaaatgtggttcaccatagaccttattaaa 11094706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 43894205 - 43894271
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccac 102  Q
    |||||||||| ||| || |||||||||||||||| ||| |||||||||||| |||||||||||||||    
T  43894205 ttttggtcatatccgttggtttttaacatcaaatgtctgaggtgaaccatatttaaagatggtccac 43894271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 2293539 - 2293459
Alignment:
Q  38 ttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| ||||| ||||||||||| ||||||| ||| | ||||| |||| |||||||||||||||||||  ||||||||||    
T  2293539 ttggtcctctccgttagtttttaaaatcaaatgtctgaagtgaatcatatttaaagatggtccaccatatgccttattaaa 2293459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 38419050 - 38418963
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    ||||| |||||||| |||||| ||||||||| |||||||||||||| |||  | |||| ||||||||| ||| || ||||||||||||    
T  38419050 tcttctgccgtttactgttttagtcatctccgttagtttttaacattaaacgtttaagatgaaccatatttataggtggtccaccata 38418963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 44159168 - 44159262
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagacctta 113  Q
    ||||| |||||||||| |||||||||||||| |||||||||||    |||||||||||||||| ||   ||| || |||||||||||||| ||||    
T  44159168 tcttctgccgtttattattttggtcatctccgttagtttttaatcctaaatatctaaggtgaaacaatattataggtggtccaccatagatctta 44159262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 44302820 - 44302902
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| |||||||||||||| |||   ||||||||||| ||| |||||| |||| ||||||||||| |||||||    
T  44302820 ttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaa 44302902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 36604857 - 36604776
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| ||||||||||| |||||||||||||| ||||||||| | |||  ||| ||||||||  |||||||||    
T  36604857 ttttggtcctctccgttagtttttaatatcaaatatctaagatgaaccatattaaaaagtggcccaccatatgccttattaa 36604776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 11094739 - 11094802
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||||||  |||||||||||||||  || |||||| ||||| |||||    
T  11094739 aaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaata 11094802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 52980199 - 52980262
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    |||||||||||||||||| |||||| |||||||||||||||  || |||||| ||||| |||||    
T  52980199 aaaagaggattgttggattatgtagagtctattgtattttattgtaaaccaccaacacctaata 52980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 29687879 - 29687817
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaat 214  Q
    ||||||| ||||||||||||||||  |||||||||||||||  ||||||||||| ||| ||||    
T  29687879 aaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaat 29687817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 34438488 - 34438587
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||| | |||||||  ||||  |||||||||||| |||||| |||| |||| || |   ||| |||| |||||||||||||||||||||    
T  34438488 atcttctgccgtttactattttggttctctctgttagtttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaa 34438587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 39592190 - 39592128
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||||||| ||||||| |||||||  || |||||| ||||| |||||    
T  39592190 aaaagaggattgttggatcatgtag-gtctattatattttattgtaaaccaccaacacctaata 39592128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 17494216 - 17494308
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| | | ||||| |||||| ||| |||||||| | |||| ||||| ||||| ||  ||||||  | |||||||||||||||||||||    
T  17494216 gccgtttactatattggttatctccgttactttttaaccttaaatgtctaacgtgaaacaacgttaaaagtagtccaccatagaccttattaa 17494308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 30683061 - 30682997
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaac 82  Q
    |||||| |||||| ||| |||||||| ||||| |||||||||||||  |||||| |||| |||||    
T  30683061 atcttcggccgttaattcttttggtcttctccgttagtttttaacaataaatatttaagatgaac 30682997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 338 - 456
Target Start/End: Original strand, 47765875 - 47765990
Alignment:
Q  338 caacaacaatgaagaaacaacaatagcaaatcaaattcaaccattcttctttgctctctttcatcatcatcatcatgaactaaaattataagagaaaaaa 437  Q
    |||||||||||||| |||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47765875 caacaacaatgaagcaacaacaatagcaaatcaaattcaacc---cttttttgctctctttcatcatcatcatcatgaattaaaattataagagaaaaaa 47765971  T
Q  438 caagtgtttaggttctgtg 456  Q
     ||||||||||||||||||    
T  47765972 gaagtgtttaggttctgtg 47765990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 47765503 - 47765617
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    |||||||  ||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  47765503 tcaaattgatcccttatatcttccgttgtttattgttttggtcatctccgttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtcc 47765602  T
Q  101 accatagaccttatt 115  Q
    |||||||||||||||    
T  47765603 accatagaccttatt 47765617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 47765654 - 47765717
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47765654 aaaagaggattgttggatcatgtagggtctattgtattttagcgtgaaccactaacacttaata 47765717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 53808409 - 53808500
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||| ||||  ||||| |||||||||||| |||||||||||    
T  53808409 cgtttactattttggtcatctccattagtttttaacatcaaatttctaaggtgaatcatatctaaaggtggtccaccataaaccttattaaa 53808500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11219513 - 11219612
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||| |||||||| | |||||||||||||| |||| |||||||||||||  |||||||||||||||| |||||| |||| ||||||||| | |||||||    
T  11219513 tcttctgccgtttactattttggtcatctccgttagattttaacatcaaaattctaaggtgaaccatatttaaaggtggttcaccatagatcgtattaaa 11219612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 17350118 - 17350048
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  17350118 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccata 17350048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 7483541 - 7483460
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||  ||| ||||||||  |||||||||    
T  7483541 ttttggtcatctccgttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggcccaccatatgccttattaa 7483460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 34903010 - 34902928
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |||||| |||| |||||| ||||||| ||||    
T  34903010 ttttggtcatctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaa 34902928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 39133117 - 39133187
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||||| ||||  ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  39133117 ttttggtcctctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccata 39133187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8371302 - 8371402
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| || ||||| | |||||||| ||||| ||||||||||||||||||||||||| | ||||| || ||| || ||||||||||| ||||||| |||    
T  8371302 atcttctgcagtttactattttggtcctctccgttagtttttaacatcaaatatctaaagcgaaccgtacttagaggtggtccaccatggaccttagtaa 8371401  T
Q  118 a 118  Q
    |    
T  8371402 a 8371402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 34902895 - 34902832
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||| |||||    
T  34902895 aaaagaggattgttggatcatgtagggtttattgttttttagtgtgaaccactaacacctaata 34902832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 32979188 - 32979270
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| |||||||||||||| |||   ||||||||||| ||| |||||| |||| ||||||||||| |||||||    
T  32979188 ttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaa 32979270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 53808533 - 53808596
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||| || ||||||||||||||  ||||||||||||||  ||||||||||||||| |||||    
T  53808533 aaaagagaatcgttggatcatgtaggatctattgtattttactgtgaaccactaacacctaata 53808596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 12062400 - 12062318
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||| ||| |||||||||||| | |||| ||||||||||||||   ||| || || ||||||||| |||||||||||    
T  12062400 ttttggtcatttccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtgatccaccatataccttattaaa 12062318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 31638234 - 31638290
Alignment:
Q  52 tagtttttaacatcaaatat--ctaaggtgaaccatagttaaagatggtccaccata 106  Q
    ||||||||||||||||||||  ||||||||||||||| |||||| ||||| ||||||    
T  31638234 tagtttttaacatcaaatatatctaaggtgaaccatatttaaaggtggtctaccata 31638290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 8371435 - 8371498
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||| ||  |||||||||||| ||  || |||||||||||| |||||    
T  8371435 aaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaata 8371498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 23559910 - 23560001
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||| ||||| |||||||||||| | || | |||||| |||||||   ||| || |||||||||||||| |||||||||    
T  23559910 cgtttactattttggtcctctccgttagtttttaaccttaattgtctaagatgaaccaactttataggtggtccaccatagatcttattaaa 23560001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18139538 - 18139421
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    ||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||  ||||||||| |||    
T  18139538 tcaaattggtcccttatatcttctgccgtttattgttttggtcctctccattagtttttaacatcaaatgtctaaggtgaaccatgtttaaagatgatcc 18139439  T
Q  101 accatagaccttattaaa 118  Q
    ||||||||| ||||||||    
T  18139438 accatagacattattaaa 18139421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 445
Target Start/End: Complemental strand, 18139159 - 18139052
Alignment:
Q  338 caacaacaatgaagaaacaacaatagcaaatcaaattcaaccattcttctttgctctctt---tcatcatcatcatcatgaactaaaattataagagaaa 434  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||| |||| | ||||   ||||||||||||||||||  ||| ||||||||||| |    
T  18139159 caacaacaatgaagaaacaacaatagcaaatcaaattcaacc---cttttttgttatctttcatcatcatcatcatcatgagttaacattataagagaga 18139063  T
Q  435 aaacaagtgtt 445  Q
    ||| |||||||    
T  18139062 aaagaagtgtt 18139052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 33802031 - 33801951
Alignment:
Q  38 ttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| ||||| ||||||||||||||||||||||||||||  |||||  || ||| |||||||||||| |||||||||||    
T  33802031 ttggtcctctccgttagtttttaacatcaaatatctaaggtagaccatgattcaaggtggtccaccatataccttattaaa 33801951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 18139387 - 18139325
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaat 214  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||| | |||||||||    
T  18139387 aaaagaggattgttggatcatgtagggtctattgtattttactgtgaaccattgacacttaat 18139325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 14328799 - 14328708
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||| ||||| ||| |||||||| | |||| ||||||||||||||   ||| || ||||||||||||||||||||||||    
T  14328799 cgtttactattttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 14328708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 14421809 - 14421718
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||| ||||| ||| |||||||| | |||| ||||||||||||||   ||| || ||||||||||||||||||||||||    
T  14421809 cgtttactattttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 14421718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 13507182 - 13507121
Alignment:
Q  41 gtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccac 102  Q
    ||||||||  ||||||||||||||||||| | |||||||||||||| |||||| ||||||||    
T  13507182 gtcatctctgttagtttttaacatcaaatgtttaaggtgaaccatatttaaaggtggtccac 13507121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 293656 - 293574
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| ||  |||||||| | |||| ||||||||||||||   ||| || ||||||||||||||||||||||||    
T  293656 ttttggtcctctccgtttatttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 293574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 2130883 - 2130931
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaacca 84  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||||    
T  2130883 ttttggtcctctcccttagtatttaaccttaaatatctaaggtgaacca 2130931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 33801918 - 33801878
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtatttta 192  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  33801918 aaaagaggattgttggatcatgtagggtctattgtttttta 33801878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 31738463 - 31738545
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| |||||||||||| | |||| ||||| ||||||||   ||| ||| |||||||||||||  ||||||||    
T  31738463 ttttggtcctctccgttagtttttaaccttaaatgtctaatgtgaaccaactttatagacggtccaccatagattttattaaa 31738545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 679 - 562
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    |||| |||||||  || |||||| ||||||||   |||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |    
T  679 tcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttc 580  T
Q  101 accatagaccttattaaa 118  Q
    ||| |||| |||||||||    
T  579 accgtagatcttattaaa 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 595 - 712
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    |||| |||||||  || |||||| ||||||||   |||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |    
T  595 tcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttc 694  T
Q  101 accatagaccttattaaa 118  Q
    ||| |||| |||||||||    
T  695 accgtagatcttattaaa 712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 9529 - 9412
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    |||| |||||||  || |||||| ||||||||   |||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |    
T  9529 tcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttc 9430  T
Q  101 accatagaccttattaaa 118  Q
    ||| |||| |||||||||    
T  9429 accgtagatcttattaaa 9412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 14109098 - 14109005
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||  ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||    
T  14109098 gccgtttaccgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 14109005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 14419055 - 14418962
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||  ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||    
T  14419055 gccgtttaccgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 14418962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 38406100 - 38406199
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| | |||||| |||||||||| | ||| ||| ||||||||||||||| |||||||||||||||| |||||| | ||||| |||||||||||||||    
T  38406100 atcttctgacgtttactgttttggtcctttccgttaatttttaacatcaaatgtctaaggtgaaccatatttaaaggtagtcca-catagaccttattaa 38406198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 24495066 - 24494986
Alignment:
Q  37 tttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    ||||||| ||||| ||||||||||||||||||| ||||| |||||||||| |||||  ||||||||||||  |||||||||    
T  24495066 tttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaaagtggtccaccatatgccttattaa 24494986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 4167570 - 4167633
Alignment:
Q  55 tttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||||| |||||||||||||||  |||||| |||||||||||||| |||||||||    
T  4167570 tttttaacatcaaatttctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaa 4167633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4857283 - 4857347
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaac 82  Q
    |||||| |||||||| |||||| ||| ||||| ||||||||||||||||||| ||||||||||||    
T  4857283 atcttctgccgtttactgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaac 4857347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 18801430 - 18801470
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtatttta 192  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  18801430 aaaagaggattgttggatcatgtagagtctattgtatttta 18801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 19848735 - 19848695
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtatttta 192  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  19848735 aaaagaggattgttggatcatgtagagtctattgtatttta 19848695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 40930533 - 40930600
Alignment:
Q  51 ttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||||||||||||||||||| |||||  || ||| || ||| ||||| |||||||||||    
T  40930533 ttagtttttaacatcaaatatctaaggtggaccatgattcaaggtgatcccccatataccttattaaa 40930600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 46458729 - 46458647
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| || ||||||||| | |||| ||||||||||||||   ||| || | ||||||||||||||||||||||    
T  46458729 ttttggtcctctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtagtccaccatagaccttattaaa 46458647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 18801334 - 18801397
Alignment:
Q  55 tttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||| ||||| |||||||||||||||| || ||| || |||||||| ||||||| ||||    
T  18801334 tttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaa 18801397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 19848831 - 19848768
Alignment:
Q  55 tttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||| ||||| |||||||||||||||| || ||| || |||||||| ||||||| ||||    
T  19848831 tttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaa 19848768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 25154952 - 25154870
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||||| || ||||||||| | |||| ||||||||||||||   ||| |  |||||||||||| | |||||||||    
T  25154952 ttttggtcatctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataagtggtccaccataaaacttattaaa 25154870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 26406208 - 26406273
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaacca 84  Q
    ||||| ||||||||   |||||||||||||| ||| |||||||| | |||| ||||||||||||||    
T  26406208 tcttctgccgtttaacattttggtcatctccgttattttttaaccttaaatgtctaaggtgaacca 26406273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 27899239 - 27899182
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaacca 84  Q
    |||||| | |||||||| | ||| |||||||||||| | |||||||||||||||||||    
T  27899239 cgtttactattttggtcttatccgttagtttttaaccttaaatatctaaggtgaacca 27899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 14108972 - 14108932
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtatttta 192  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  14108972 aaaagaggattgttggatcatgtaggatctattatatttta 14108932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 14418929 - 14418889
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtatttta 192  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  14418929 aaaagaggattgttggatcatgtaggatctattatatttta 14418889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 38406232 - 38406272
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtatttta 192  Q
    ||||||||||||||||||||| ||  |||||||||||||||    
T  38406232 aaaagaggattgttggatcatttaaagtctattgtatttta 38406272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 117130 - 117230
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| | ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||  |||  |||||| ||||||||||||||||||| |||    
T  117130 atcttctgtcgtttattgttttggtcctctccgttagtttttaacatcaaatgtctaaggtgagtcatgtttaaaggtggtccaccatagaccttactaa 117229  T
Q  118 a 118  Q
    |    
T  117230 a 117230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 10052204 - 10052286
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||||| |||||||||||||| |||| |||||| ||||||||| |||||| |||||||||||| |||||||||||    
T  10052204 ttttggtcatctcctttagtttttaacattaaatgtctaagatgaaccatatttaaaggtggtccaccataaaccttattaaa 10052286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 36756155 - 36756246
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||| |||| |||||||  ||||||||||    
T  36756155 cgtttactattttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcatatttaaaggtggttcaccataagccttattaaa 36756246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 21670164 - 21670245
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||  ||||||||||||  |||||||||    
T  21670164 ttttggtcttctccgttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaa 21670245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 39546704 - 39546611
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||| | |||| ||||||||  |||||| ||||||||||| ||||||| ||||    
T  39546704 gccgtttaccgttttggtcatctccgttagtttttaacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggaccttagtaaa 39546611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 44103312 - 44103231
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||  |||||||||    
T  44103312 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatatgccttattaa 44103231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 13367084 - 13366984
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||| | |||||||| ||||| |||||||||||| | |||| ||||||||||||||   ||| || |||||||||||||||||||||||    
T  13367084 atcttctgccgtttactattttggtcctctccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 13366985  T
Q  118 a 118  Q
    |    
T  13366984 a 13366984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 13363479 - 13363416
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||    
T  13363479 aaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaata 13363416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 7486177 - 7486259
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| ||||||||||||||||||| ||||| |||||||||  |||||  | ||||||||||||||||||||||    
T  7486177 ttttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccatagaccttattaaa 7486259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 21267233 - 21267314
Alignment:
Q  37 tttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| |||||  || ||| |||||||||||| |||| ||||||    
T  21267233 tttggtcctctccgttagtttttaacatcaaatatctaaggtggaccatgattcaaggtggtccaccatatacctaattaaa 21267314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 37276270 - 37276177
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||| | |||||| ||||  ||||||||||||||||||  |||||||||||||||| |||||| |||| ||| ||||||| |||||||    
T  37276270 gccgtttattatattggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagaccatattaaa 37276177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 2421327 - 2421227
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||||| |||||||| |||   |||||||||||| | |||| ||||||||||||||   ||| |||||||||| |||||||||||||||    
T  2421327 atcttctgccgtttattattttggtcctctttgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccatcatagaccttattaa 2421228  T
Q  118 a 118  Q
    |    
T  2421227 a 2421227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 36938763 - 36938851
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||| |||||||| | |||||||| ||||  ||| ||||||||||||||||||||| |||||||||| |||||| |||| |||||||    
T  36938763 atcttctgccgtttactattttggtcttctctgttaatttttaacatcaaatatctaaagtgaaccatatttaaaggtggttcaccata 36938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 19913575 - 19913674
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||| || ||||||  |||||||| ||||| |||||||||||| | |||| ||||||||||||||   ||| |||||||||||||||||| ||||||||    
T  19913575 tcttctgcggtttatcattttggtcctctccgttagtttttaaccttaaatttctaaggtgaaccaactttatagatggtccaccatagactttattaaa 19913674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 13363594 - 13363512
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| ||||||||||||| ||||| ||||| |||||||||| |||||| |||| |||||| ||||||| ||||    
T  13363594 ttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaa 13363512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 21961923 - 21961993
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||||| ||||| ||||||||||||||||||| ||| |||||||||||  |||||| ||||||||||||    
T  21961923 ttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccata 21961993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 12281797 - 12281716
Alignment:
Q  35 gttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttatta 116  Q
    |||||| || ||||| ||||||||||||||||||||||||| ||| |||||  || ||| |||||||||||| |||||||||    
T  12281797 gttttgatcctctccgttagtttttaacatcaaatatctaatgtggaccatgattcaaggtggtccaccatataccttatta 12281716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 13513520 - 13513601
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| |||| |||||||||||||| | |||| ||||||||| |||||  |||||||||||| ||||||||||    
T  13513520 ttttggtcctctccgttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaa 13513601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 13603053 - 13603134
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| |||| |||||||||||||| | |||| ||||||||| |||||  |||||||||||| ||||||||||    
T  13603053 ttttggtcctctccgttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaa 13603134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 10052319 - 10052381
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaat 214  Q
    |||||| |||||||||||||||||| |||||||||||||||  ||||||||||| ||| ||||    
T  10052319 aaaagatgattgttggatcatgtagggtctattgtattttactgtgaaccactaccacctaat 10052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 35944008 - 35944090
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||||| |||||||||||| | |||| ||||||||||||||   ||| || || ||||||||||| |||||||||    
T  35944008 ttttggtcatctccgttagtttttaactttaaatgtctaaggtgaaccaactttataggtgatccaccatagatcttattaaa 35944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 39546578 - 39546516
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaat 214  Q
    ||||||||||||||||||||||| |  |||||||||||||| |||||||||| ||||| ||||    
T  39546578 aaaagaggattgttggatcatgtgggatctattgtattttaccgtgaaccacaaacacctaat 39546516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 44606231 - 44606321
Alignment:
Q  28 gtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||| ||||| || ||||| |||||||||||| | |||| ||||||||||||||   ||| || |||||||||||||||||| |||||    
T  44606231 gtttattattttgatcctctccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaa 44606321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 39546329 - 39546257
Alignment:
Q  338 caacaacaatgaagaaacaacaatagcaaatcaaattcaaccattcttctttgctctctttcatcatcatcatcat 413  Q
    |||||||||||||  |||||||||||||| ||||||||||||   ||| ||| || ||||||||||||||||||||    
T  39546329 caacaacaatgaaccaacaacaatagcaattcaaattcaacc---ctttttttctttctttcatcatcatcatcat 39546257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 36070260 - 36070360
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||| | |||||||| || || ||||| ||| || | |||| ||||||||||||||   ||| || |||||||||||||||||||||||    
T  36070260 atcttctgccgtttactattttggtcctccccgttagtctttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 36070359  T
Q  118 a 118  Q
    |    
T  36070360 a 36070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 20308696 - 20308787
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||| ||| ||| |||||||| | |||| ||||||||||||||   ||| |||| |||| |||||||||||||||||    
T  20308696 cgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccatagaccttattaaa 20308787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 21095329 - 21095420
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||| ||| ||| |||||||| | |||| ||||||||||||||   ||| |||| |||| |||||||||||||||||    
T  21095329 cgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccatagaccttattaaa 21095420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 36756279 - 36756343
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtcta-ttgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||| || |||||||||||||| ||||| ||||||||||  ||||||||||||||| |||||    
T  36756279 aaaagagaatcgttggatcatgtagggtctaattgtattttactgtgaaccactaacacctaata 36756343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 117263 - 117325
Alignment:
Q  153 aaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    |||||||||||||||||||| |||  ||||||||||||||  || |||||| |||| ||||||    
T  117263 aaagaggattgttggatcatataggatctattgtattttattgtaaaccaccaacatttaata 117325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 41522721 - 41522632
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccataga 108  Q
    ||||| |||||||| |||||| ||| | ||| | | ||||||||||||||||| |||| ||||||||  |||||  ||||||| ||||||    
T  41522721 tcttctgccgtttactgttttagtcctttccgtcaatttttaacatcaaatatttaagatgaaccatgtttaaaagtggtccagcataga 41522632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 9633865 - 9633957
Alignment:
Q  26 ccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||  |||||| || ||||| ||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||    
T  9633865 ccgtttacagttttgatcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaa 9633957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 49141512 - 49141434
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttat 114  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||    
T  49141512 ttttagtcatctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaagttgttccaccatagaccttat 49141434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 44977322 - 44977403
Alignment:
Q  37 tttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||| ||||||||| || |||||||||||    
T  44977322 tttggtcatctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccgtaaaccttattaaa 44977403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 51218980 - 51218900
Alignment:
Q  38 ttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| ||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||  ||||||||||    
T  51218980 ttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaagatggtccaccatatgccttattaaa 51218900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 30551490 - 30551427
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  30551490 aaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 30551427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 37624471 - 37624408
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  37624471 aaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 37624408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 23082142 - 23082060
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| | ||| ||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||| ||||||| ||||    
T  23082142 ttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttaataaa 23082060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 50678463 - 50678545
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||  ||||||||||||||||||  |||||||||||||||| |||||| |||| ||||||||||| |||||||    
T  50678463 ttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 50678545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 27689383 - 27689464
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| ||||||||||||| ||||| ||||| |||||||||| |||||| ||||||| ||| |||||||||||    
T  27689383 ttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtccatcatggaccttattaa 27689464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 52743001 - 52742912
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttatta 116  Q
    |||||| |||| ||||| ||||| ||||||||||||||||||| | |||||||||||||  |||||| |||| |||||||||||| ||||    
T  52743001 cgtttactgttatggtcctctccgttagtttttaacatcaaatgtttaaggtgaaccatgtttaaaggtggtacaccatagacctaatta 52742912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8092680 - 8092780
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    ||||||| ||||||| || ||||||| | ||| ||||| |||||| | |||||||||||||||||||   ||| || |||||||||||||||||||||||    
T  8092680 atcttcctccgtttactgatttggtcctttccgttagtatttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaa 8092779  T
Q  118 a 118  Q
    |    
T  8092780 a 8092780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 22766836 - 22766760
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagacctt 112  Q
    |||||||| | ||| ||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||| ||||||    
T  22766836 ttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggacctt 22766760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 27689510 - 27689565
Alignment:
Q  160 attgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  27689510 attgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 27689565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 30551605 - 30551523
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||||| |||||||||| |||||||| ||||| |||||||||| | |||| |||| |||||| ||||||| ||||    
T  30551605 ttttggtcatctccgttagtttttagcatcaaatgtctaaagtgaaccatattaaaaggtggtgcaccatggaccttagtaaa 30551523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 21277076 - 21277176
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||| | ||||| || ||||| ||||||||| || | |||| ||||||||||||||   ||| || |||||||||||||||||||||||    
T  21277076 atcttctgccgtttactattttgatcctctccattagtttttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 21277175  T
Q  118 a 118  Q
    |    
T  21277176 a 21277176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 14764320 - 14764399
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||| |||||| ||||||||  |||||||||||||| |||| | ||||||||||| || |||||| ||||||||||||    
T  14764320 cgtttactgttttagtcatctctgttagtttttaacattaaatgtttaaggtgaaccttatttaaaggtggtccaccata 14764399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 26056172 - 26056081
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||| ||||| |||| |||||||||||||  ||||| |||||||||| |||||| |||| |||||||| || |||||||    
T  26056172 cgtttactattttggtcctctccgttagattttaacatcaaaagtctaaagtgaaccatatttaaaggtggttcaccataggccgtattaaa 26056081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 37624586 - 37624504
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| ||||||||||||||||||| ||||| |||||||||| | |||| | || |||||| ||||||| ||||    
T  37624586 ttttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatattaaaaggttgtgcaccatggaccttagtaaa 37624504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 51726878 - 51726778
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| | |||||| | |||| ||| || || |||||||||||| | |||| ||||||||||||||   ||| || |||||||||||||||||||||||    
T  51726878 atcttctgtcgtttactattttagtcctcaccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 51726779  T
Q  118 a 118  Q
    |    
T  51726778 a 51726778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 23082027 - 23081964
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    ||||| |||||||||||| |||||  |||||||||||||||| || |||||||||||| |||||    
T  23082027 aaaagtggattgttggataatgtaaggtctattgtattttagtgtaaaccactaacacctaata 23081964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 36509893 - 36509992
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||| | |||||||  ||||| |||||||||||| |||||| |||| |||| || |   ||| ||||  ||||||||||||||||||||    
T  36509893 atcttctgccgtttactattttggttctctccgttagtttttaacctcaaatgtctatggtggactaacattatagatattccaccatagaccttattaa 36509992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 40811284 - 40811321
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaac 62  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  40811284 gccgtttattattttggtcatctccgttagtttttaac 40811321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 14169734 - 14169798
Alignment:
Q  51 ttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttatt 115  Q
    |||||||||||| | |||| ||||||||||||||   ||| || ||| |||||||||||||||||    
T  14169734 ttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggcccaccatagaccttatt 14169798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 19466212 - 19466140
Alignment:
Q  45 tctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    ||||| |||||||||||| |||||| |||| |||| || |   ||| |||| |||||||||||||||||||||    
T  19466212 tctccgttagtttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaa 19466140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 12852977 - 12853068
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||| |||||||    
T  12852977 cgtttactattttggtcatctccgttagattttaacatcaaaaatctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 12853068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 14714592 - 14714673
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||  |||||||||    
T  14714592 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatacgccttattaa 14714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 4512206 - 4512287
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||  ||||||||||||  |||||||||    
T  4512206 ttttggtcctctccattagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaa 4512287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 29424639 - 29424546
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||||||||| ||||  ||||||  ||||||||||| |||||| ||||||||  |||||| ||||||| ||||||||||||||||    
T  29424639 gccgtttattgttttggtcctctctgttagttactaacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaa 29424546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 23177756 - 23177856
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| ||||||||   |||||||| ||||| |||||||||||||| ||| ||||||| ||||||||| ||||||||||| |||| |||| ||||||||    
T  23177756 atcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaa 23177855  T
Q  118 a 118  Q
    |    
T  23177856 a 23177856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 23589013 - 23589113
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| ||||||||   |||||||| ||||| |||||||||||||| ||| ||||||| ||||||||| ||||||||||| |||| |||| ||||||||    
T  23589013 atcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaa 23589112  T
Q  118 a 118  Q
    |    
T  23589113 a 23589113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 26205114 - 26205194
Alignment:
Q  37 tttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||  ||||||||||||  |||||||||    
T  26205114 tttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaa 26205194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 7983692 - 7983629
Alignment:
Q  55 tttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||||| |||||||||||||||  |||||| |||||||||||||| |||||||||    
T  7983692 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaa 7983629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 41296355 - 41296292
Alignment:
Q  152 aaaagaggattgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    |||||||||||||| ||||||||||  ||||||||||||||| ||||| ||||||||| |||||    
T  41296355 aaaagaggattgttcgatcatgtaggatctattgtattttagtgtgaatcactaacacctaata 41296292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 45047447 - 45047524
Alignment:
Q  41 gtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||| ||| ||| ||||||| ||||||| |||||||||||||||| |||||| |||||||||||  |||||| ||||    
T  45047447 gtcatttccgttaatttttaatatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatgtaccttagtaaa 45047524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 14509291 - 14509391
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| | |||||| | |||||||| ||||| ||| |||||||| | |||| |||||||| |||||   ||| || |||||||||||||||||||||||    
T  14509291 atcttctgtcgtttactattttggtcctctccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttattaa 14509390  T
Q  118 a 118  Q
    |    
T  14509391 a 14509391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 3528266 - 3528199
Alignment:
Q  51 ttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||| | ||||  |||||||||||||||| |||||| |||| ||||||||||| |||||||    
T  3528266 ttagtttttaatagcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 3528199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 21010514 - 21010432
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||  |||||| |||||||||||| ||||| ||||||| || |||||| ||||| | |||| |||||||||||    
T  21010514 ttttggtcctctctgttagttgttaacatcaaatgtctaatgtgaaccgtatttaaaggtggtctatcataaaccttattaaa 21010432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 14714718 - 14714770
Alignment:
Q  163 gttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||| |||||    
T  14714718 gttgaatcatgtagagtctattgtattttactgtgaaccactaacacctaata 14714770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 3532313 - 3532364
Alignment:
Q  55 tttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||||||| |||| | |||||||||||||| |||||| ||||||||||||    
T  3532313 tttttaacattaaatgtttaaggtgaaccatatttaaaggtggtccaccata 3532364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 10367322 - 10367421
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||| ||||||||   |||| ||| ||||| || ||||||||| | |||| ||||||||||||||   ||| || |||||||| |||||||||||||||    
T  10367322 tcttctgccgtttacctttttagtcgtctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaaa 10367421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 21010391 - 21010336
Alignment:
Q  160 attgttggatcatgtagcgtctattgtattttagcgtgaaccactaacacttaata 215  Q
    |||||||||||| |||| |||||||||||||||   |||||||||||||| |||||    
T  21010391 attgttggatcaggtagggtctattgtattttattatgaaccactaacacctaata 21010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 25570871 - 25570804
Alignment:
Q  51 ttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||||||  | |||| ||||||||||||||   ||| || ||||||||||||||||||||||||    
T  25570871 ttagtttttaaacttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaa 25570804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 37869056 - 37868974
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| || ||||||||| | |||| |||||||||| |||   ||| || |||||||| |||||||||||||||    
T  37869056 ttttggtcttctccgtttgtttttaaccttaaatgtctaaggtgagccaactttataggtggtccacaatagaccttattaaa 37868974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 41296470 - 41296388
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||| ||||||||||||| ||||| ||||| ||||| |||| | |||| |||| |||||| || |||| ||||    
T  41296470 ttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaatcatattaaaaggtggtgcaccatggatcttagtaaa 41296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 12959756 - 12959639
Alignment:
Q  1 tcaaattagtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtcc 100  Q
    |||| |||||||  || |||||| ||||||||   ||||| || ||||| || || |||||| | |||| ||||||||||||||   ||| || ||||||    
T  12959756 tcaatttagtccgataaatcttctgccgtttacctttttgatcctctccgtttgtctttaaccttaaatgtctaaggtgaaccaactttataggtggtcc 12959657  T
Q  101 accatagaccttattaaa 118  Q
    || |||||||||||||||    
T  12959656 acaatagaccttattaaa 12959639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 4829556 - 4829640
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagacct 111  Q
    |||||| | |||||||| ||||  ||||| |||||| | ||||||||||||| |||||   ||| || |||||||||||||||||    
T  4829556 cgtttactattttggtcctctctgttagtgtttaaccttaaatatctaaggtaaaccaactttataggtggtccaccatagacct 4829640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 56743 - 56634
Alignment:
Q  9 gtcctttatatcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccataga 108  Q
    ||||| || |||||| |||||||| ||||| | || ||||  |||||||||||||||||||||||||||  ||| ||  ||||||||||||||||| |||    
T  56743 gtcctataaatcttctgccgtttactgtttagatcctctctattagtttttaacatcaaatatctaagggaaactatgtttaaagatggtccaccaaaga 56644  T
Q  109 ccttattaaa 118  Q
    ||||||||||    
T  56643 ccttattaaa 56634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 422
Target Start/End: Complemental strand, 56340 - 56254
Alignment:
Q  330 caacacatcaacaacaatgaagaaacaacaatagcaaatcaaattcaaccattcttctttgctctctttcatcatcatcatcatgaactaaaa 422  Q
    ||||||||||||||||  | || ||||||| || |||||||||||||||||||    ||| || |||||||| |||||||||||||| |||||    
T  56340 caacacatcaacaaca--gcagcaacaacattaccaaatcaaattcaaccatt----tttcctttctttcattatcatcatcatgaattaaaa 56254  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 2167548 - 2167449
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||||| |||||||| ||||  |||||||||||| | |||| ||||||||||||||   ||| ||||||||||||||||||||||||||    
T  2167548 atcttctgccgtttattattttggtc-tctctgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagaccttattaa 2167450  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 7426760 - 7426823
Alignment:
Q  55 tttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  7426760 tttttaacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaa 7426823  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 18693798 - 18693880
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||  ||||||||||||||||||  ||||||||||||||||  ||||| |||| ||||||||||| |||||||    
T  18693798 ttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatataaaggtggttcaccatagaccgtattaaa 18693880  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 5383033 - 5383124
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | ||||| || ||||| |||||||||||| | |||| ||||||||||| ||   ||| || ||||||||||||||||||||||||    
T  5383033 cgtttactattttgatcctctccgttagtttttaaccttaaatgtctaaggtgaatcaactttataggtggtccaccatagaccttattaaa 5383124  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 21387752 - 21387819
Alignment:
Q  51 ttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||||||||||||||||  ||||||||||| |||| |||||| |||| |||||||| || |||||||    
T  21387752 ttagtttttaacatcaaaactctaaggtgaaacatatttaaaggtggttcaccataggccgtattaaa 21387819  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 32734222 - 32734313
Alignment:
Q  27 cgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||| | |||||||||| ||| |||||||||||  | ||||||||||||||||| |   | | |||| ||||||||||||||||||||||    
T  32734222 cgtttactattttggtcatttccgttagtttttaatcttaaatatctaaggtgaacaaccttaatagatagtccaccatagaccttattaaa 32734313  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 40058101 - 40058200
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||| ||||||||   |||||||||||||| |||||||||||  | |||| ||||||||||||||   ||| |  | ||||||||||||||||||||||    
T  40058101 tcttctgccgtttaccattttggtcatctccgttagtttttaatcttaaatgtctaaggtgaaccaactttataagtagtccaccatagaccttattaaa 40058200  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 22819550 - 22819485
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaacca 84  Q
    ||||| |||||||| | |||||||||||||| ||||||||||||   | |||||||||||||||||    
T  22819550 tcttctgccgtttactattttggtcatctccgttagtttttaaccctatatatctaaggtgaacca 22819485  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 19525321 - 19525222
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    ||||| ||||||||   |||||||| ||||| || ||||||||| | |||| |||| |||||||||   ||| |  ||||||||||||||||||||||||    
T  19525321 tcttctgccgtttaccattttggtcctctccgtttgtttttaaccttaaatttctatggtgaaccaactttatatgtggtccaccatagaccttattaaa 19525222  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 42510196 - 42510295
Alignment:
Q  18 atcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaa 117  Q
    |||||| |||||||| | |||||||  ||||| |||||||||||| |||||| |||| |||| || |   |||  ||| |||||||||||||||||||||    
T  42510196 atcttctgccgtttactattttggttctctccgttagtttttaacctcaaatgtctatggtgcactaacattattgatagtccaccatagaccttattaa 42510295  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 12830971 - 12830877
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagacctta 113  Q
    ||||| || ||||| | |||||||| ||||| ||| ||||||||   |||||||| ||||||||||   ||| || |||||||||||||||||||    
T  12830971 tcttctgctgtttactattttggtcctctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12830877  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 12862951 - 12862857
Alignment:
Q  19 tcttccgccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagacctta 113  Q
    ||||| || ||||| | |||||||| ||||| ||| ||||||||   |||||||| ||||||||||   ||| || |||||||||||||||||||    
T  12862951 tcttctgctgtttactattttggtcctctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12862857  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 7345390 - 7345350
Alignment:
Q  52 tagtttttaacatcaaatatctaaggtgaaccatagttaaa 92  Q
    |||||||||||||||||  |||||||||||||||| |||||    
T  7345390 tagtttttaacatcaaaactctaaggtgaaccatatttaaa 7345350  T

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Target: scaffold0084 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 13220 - 13150
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||||| | ||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13220 ttttggtcctatccattaggttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccata 13150  T

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Target: scaffold0098 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 41023 - 41078
Alignment:
Q  51 ttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  41023 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccata 41078  T

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Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 207814 - 207744
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccata 106  Q
    |||||||| ||||| ||||||||||||||||||| ||| |||||||||||  |||||| ||||||||||||    
T  207814 ttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccata 207744  T

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Target: scaffold0122 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 16034 - 16127
Alignment:
Q  25 gccgtttattgttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| | |||| ||| ||||| |||||||||||| | |||| |||||| |||||||   ||| |||||||||||||||||||||||||||    
T  16034 gccgtttactattttagtcctctccgttagtttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaaa 16127  T

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Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 77207 - 77117
Alignment:
Q  26 ccgtttattgttttggtcatctcccttagtttttaacatcaaatat--ctaaggtgaaccatagttaaagatggtccaccatagaccttat 114  Q
    ||||||| |||||||||| ||||| ||| | ||| ||||||||| |  ||||||||||||||| |||||| ||||||||||| ||||||||    
T  77207 ccgtttactgttttggtcttctccgttaatgtttgacatcaaatgtgtctaaggtgaaccatatttaaaggtggtccaccattgaccttat 77117  T

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Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 39917 - 39835
Alignment:
Q  36 ttttggtcatctcccttagtttttaacatcaaatatctaaggtgaaccatagttaaagatggtccaccatagaccttattaaa 118  Q
    |||||||| ||||  ||||||||||||||||||  ||||||||||| |||| |||||| |||| |||||| |||| |||||||    
T  39917 ttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggaccgtattaaa 39835  T

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