View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_20 (Length: 461)
Name: NF3173_high_20
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 53037863 - 53037431
Alignment:
| Q |
10 |
catcatcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccata |
109 |
Q |
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| T |
53037863 |
catcatcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccata |
53037764 |
T |
|
| Q |
110 |
aattggcaatgtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaactta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037763 |
aattggcaatgtcaaccaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaactta |
53037664 |
T |
|
| Q |
210 |
gtcaaatcctcttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcatacccta |
309 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037663 |
gtcaaatcctcttgcttcttaaaatactcgattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcatacccta |
53037564 |
T |
|
| Q |
310 |
aaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcct |
409 |
Q |
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| T |
53037563 |
aaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcct |
53037464 |
T |
|
| Q |
410 |
ccaatcaacacaaacaccaagcgaagtttgttg |
442 |
Q |
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| T |
53037463 |
ccaatcaacacaaacaccaagcgaagtttgttg |
53037431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 432
Target Start/End: Original strand, 39995742 - 39996151
Alignment:
| Q |
23 |
actaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat |
119 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||| || || ||||| ||||||||||||||||||||||||||| |
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| T |
39995742 |
actaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaattggcaat |
39995841 |
T |
|
| Q |
120 |
gtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcct |
219 |
Q |
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| |||||||||| |||||||||||| ||||| | |||||| ||||| || ||| || |||| | | | ||||||||||| |||||||||||||| | |
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| T |
39995842 |
gacaaccaactagtcactcctaaattaggattccaataaaaaggccccttctcaccattccctac---aacttgaagatcttggaacttagtcaaatctt |
39995938 |
T |
|
| Q |
220 |
cttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttaga |
319 |
Q |
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| T |
39995939 |
cttgcttcttaaagtactcattccccaacctaatatactcatcgttcactttctcaaccgcttcccttatcctacttgaagcataccctaagggtttaga |
39996038 |
T |
|
| Q |
320 |
tattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaaca |
419 |
Q |
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|||||||| ||||| ||||||||||||| |||||| ||| | ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
39996039 |
cattaaatcacctgctagactagtagccaaaacatctaaaatggcattcccaaaataccctttaggtaaattaggttccacacgacgcctccaatcaaca |
39996138 |
T |
|
| Q |
420 |
caaacaccaagcg |
432 |
Q |
| |
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||||||||||||| |
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| T |
39996139 |
caaacaccaagcg |
39996151 |
T |
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