View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_26 (Length: 421)
Name: NF3173_high_26
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 51749486 - 51749085
Alignment:
| Q |
15 |
tctatgacaacgtgagtcgtcaatgtgagacatatgattgcactctcaggttccttgtggttgaatttcaacaaggattcaatgtttctagagttggaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51749486 |
tctatgacaacgtgagtcgtcaatgtgagacatatgactgcactctcaggttccttgtggttgaatttcaacaaggattcaatgtttctagagttggaat |
51749387 |
T |
|
| Q |
115 |
ttaacatgccaaatcaccgaacatggcttagctaaatgcaaaccgtaaagattagcatctttctaatattctctcattttccactaattttaaccgatag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51749386 |
ttaacatgccaaatcaccgaacatggcttagctaaatgcaaaccgtaaagattagcatctttcaaatattctctcattttccactaattttaaccgatag |
51749287 |
T |
|
| Q |
215 |
cttcactgcttcaacaacaacaataaattggttttatattccaataaataaatgaatttgttttaagtaatgggattaatattgtttgtggcttggtgcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51749286 |
cttcactgcttcaacaacaacaataaattggttttatattccaataaataaatgaatttgttttaagtaatgggattaatattgtttgtggcttggtgcc |
51749187 |
T |
|
| Q |
315 |
ggcgttaatggattgtatacctcagatcacaaatgggtcaatgagctactagtaaaaggtaaagataatagggattgatacgtgttgttctattcatctc |
414 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51749186 |
ggcgttaatggattgtataactcagatcacaaatgggtcaatgagctactagtaaaaggtaaagataatagggattgatacgtgttgttctattcttctc |
51749087 |
T |
|
| Q |
415 |
ag |
416 |
Q |
| |
|
|| |
|
|
| T |
51749086 |
ag |
51749085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University