View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_27 (Length: 419)
Name: NF3173_high_27
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 67 - 407
Target Start/End: Original strand, 40353437 - 40353778
Alignment:
| Q |
67 |
agaaattcagtaccatcgattgctccgctccaaacaattttgtactaagtttatgatcaaacttacattgttcaaccgtatacaatttgtnnnnnnnnng |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40353437 |
agaaattcagtaccatcgattgctccgctccaaacaattttgtactaagtttatgatcaaacttacattgttcaaccgtatacaatttgtaaaaaaaaaa |
40353536 |
T |
|
| Q |
167 |
-ttatcacaccttggtctatcattatcttactcaacattatcggataatagatcatatttatgttactcaaattacccataactgtgtccaaaaacagca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40353537 |
attatcacaccttggtctatcattatcttactcaacattattggataatagatcatatttatgttactcaaattacacataactgtgtccaaaaacagca |
40353636 |
T |
|
| Q |
266 |
gtgacaaatttacctttttgatctttagagtgttgtaaatacaaaagttgtgtaggtttgagactcggtattcatcttggtcacattgtatgaatatctt |
365 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40353637 |
gtgacaaatttacctttttgttctttagagtgttgtaaatacaaaagttgtgtaggtttgagactcggcattcatcttggtcacattgtatgaatatctt |
40353736 |
T |
|
| Q |
366 |
ctagataaagtaataaagaagaccatgatttgctttcatctg |
407 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40353737 |
cttgataaagtaataaagaagaccatgatttgctttcatctg |
40353778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University