View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_29 (Length: 415)

Name: NF3173_high_29
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_29
NF3173_high_29
[»] chr6 (7 HSPs)
chr6 (12-211)||(9818447-9818646)
chr6 (280-397)||(9818714-9818831)
chr6 (28-215)||(9824183-9824365)
chr6 (280-398)||(9824393-9824515)
chr6 (293-378)||(4966829-4966912)
chr6 (122-211)||(4966586-4966672)
chr6 (122-212)||(4966656-4966748)
[»] chr5 (4 HSPs)
chr5 (30-212)||(6408186-6408370)
chr5 (50-151)||(1000247-1000339)
chr5 (42-114)||(6411475-6411547)
chr5 (54-145)||(1000732-1000823)
[»] chr4 (1 HSPs)
chr4 (46-126)||(43545664-43545748)
[»] chr3 (3 HSPs)
chr3 (30-88)||(41503524-41503582)
chr3 (298-338)||(9488740-9488780)
chr3 (293-353)||(23202777-23202837)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 9818447 - 9818646
Alignment:
Q  12 atgaaatctaaagtagcaaagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattca 111  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  9818447 atgaaatctaaagtagcaaagaacgcacaaaattaaacacatattcattactaatcatcaaagttcgttgctagtaacactttaaacataatataattca 9818546  T
Q  112 agtatcaaataagttgtagcctccaaggctcaaaataacaacatatctaatattcaaacataacataaagcaaattaggaaataagttctagtctccaag 211  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||| |||||||    
T  9818547 agtagcaaataagttgtagcctccgaggctcaaaataacaacatatcgaatattccaacataacataaagcaaaataggaaataagttatagcctccaag 9818646  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 280 - 397
Target Start/End: Original strand, 9818714 - 9818831
Alignment:
Q  280 caacagcattccctattaccaaaagttgcatcaaagggctccttcacaacctgcaattagaagaaactcaaatggaactcaaaagaaaaataatcaagaa 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9818714 caacagcattccctattaccaaaagttgcatcaaagggctccttcacaacctgcaattagaaaaaactcaaatggaactcaaaagaaaaataatcaagaa 9818813  T
Q  380 agagtattacttatttaa 397  Q
    ||||||||||||||||||    
T  9818814 agagtattacttatttaa 9818831  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 9824183 - 9824365
Alignment:
Q  28 caaagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagtatcaaataagttg 127  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  9824183 caaagaatgcacaaaattaaaca--tattcattactaatcatcaaagttatttgctactaacactttaaacataatataattcaagtagcaaataagttg 9824280  T
Q  128 tagcctccaaggctcaaaataacaacatatctaatattcaaacataacataaagcaaattaggaaataagttctagtctccaaggctc 215  Q
    ||||||||| |||||||| |   ||||||||||||||||||||||| |||||| ||||  |||||||||||| ||| |||||||||||    
T  9824281 tagcctccatggctcaaagt---aacatatctaatattcaaacatatcataaatcaaaaaaggaaataagttatagcctccaaggctc 9824365  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 9824393 - 9824515
Alignment:
Q  280 caacagcattccctattaccaaaagttgcatcaaagggctccttcacaacctgcaattagaagaaactcaaatggaac--tcaa-aag-aaaaataatca 375  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  |||| ||| ||||| |||||    
T  9824393 caacagcatttcctattacaaaaagttgcttcaaagggctccttcacaacctgcaattaaaagaaactcaaatggaactttcaagaagaaaaaaaaatca 9824492  T
Q  376 agaaagagtattacttatttaat 398  Q
    |||||||||||| ||||||||||    
T  9824493 agaaagagtatttcttatttaat 9824515  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 4966829 - 4966912
Alignment:
Q  293 tattaccaaaagttgcatcaaagggctccttcacaacctgcaattagaagaaactcaaatggaactcaaaagaaaaataatcaaga 378  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||| |||||  |||||||| ||||||||    
T  4966829 tattgccaaaagttgcaacaaatggctccttcacaacctgcaattaaaagaaactcatatgtaactc--aagaaaaaaaatcaaga 4966912  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 4966586 - 4966672
Alignment:
Q  122 aagttgtagcctccaaggctcaaaataacaacatatctaatattcaaacataacataaagcaaattaggaaataagttctagtctccaag 211  Q
    ||||| ||| |||||||||||||||| |||    |||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  4966586 aagttctaggctccaaggctcaaaatgacac---atctaatattcaaacatagcataaagcaaaataggaaacaagttctagcctccaag 4966672  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 4966656 - 4966748
Alignment:
Q  122 aagttgtagcctccaaggctcaaaata--acaacatatctaatattcaaacataacataaagcaaattaggaaataagttctagtctccaagg 212  Q
    ||||| |||||||||||  ||||||||  |||||  ||| |||||||||||||||||||||||| | | ||||||||||||||| ||||||||    
T  4966656 aagttctagcctccaagattcaaaatagcacaactaatccaatattcaaacataacataaagcagaattggaaataagttctagcctccaagg 4966748  T

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Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 6408370 - 6408186
Alignment:
Q  30 aagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacat-----aatataattcaagtatcaaataag 124  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||     ||||||||||  ||| ||||||||    
T  6408370 aagaatgcacagaattaaacacaaattcattactaatcatcaaagttcattgctattaatatttcaaacataatacaatataattcttgtagcaaataag 6408271  T
Q  125 ttgtagcctccaaggctcaaaataacaacatatctaatattcaaacataacataaagcaaattaggaaataagttctagtctccaagg 212  Q
    || ||| |||||| |||||| ||   ||||||||||| ||||||||| || |||||||||| ||||||||||||||||| ||||||||    
T  6408270 ttctagtctccaaagctcaacat---aacatatctaacattcaaacagaatataaagcaaaataggaaataagttctagcctccaagg 6408186  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 1000247 - 1000339
Alignment:
Q  50 acatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagtatcaaataagttgtagcctccaaggctcaaaataa 149  Q
    |||||||||||| || |||||||| |||||||||||||| |||||||||||||||      |||   |||||||||| ||||| ||||||||||||||||    
T  1000247 acatattcattaatactcatcaaaattcattgctactaatattttaaacataata------aag---caaataagttctagccaccaaggctcaaaataa 1000337  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 6411547 - 6411475
Alignment:
Q  42 aattaaacacatattcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagt 114  Q
    ||||||||||| ||||  |||| ||||||||||||||||||||  || |||| ||||||||||||||||||||    
T  6411547 aattaaacacaaattctgtactgatcatcaaagttcattgctataaatatttcaaacataatataattcaagt 6411475  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 1000823 - 1000732
Alignment:
Q  54 attcattactaatcatcaaagttcattgctactaacattttaaacataatataattcaagtatcaaataagttgtagcctccaaggctcaaa 145  Q
    |||||| | |||||||||||||||||||||| ||| |||| ||||||||| |||   ||    |||||||||| |||||||||||| |||||    
T  1000823 attcataaataatcatcaaagttcattgctaataatatttcaaacataatctaaagaaaaatgcaaataagttctagcctccaaggttcaaa 1000732  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 43545748 - 43545664
Alignment:
Q  46 aaacacatattcattactaatcatcaaagttcattgcta----ctaacattttaaacataatataattcaagtatcaaataagtt 126  Q
    |||||||||||| |||||||||| ||||||||||||||     |||| |||| ||||||||||||||||||||| ||||||||||    
T  43545748 aaacacatattcgttactaatcaacaaagttcattgcttgctcctaatatttcaaacataatataattcaagtagcaaataagtt 43545664  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 41503524 - 41503582
Alignment:
Q  30 aagaatgcacacaattaaacacatattcattactaatcatcaaagttcattgctactaa 88  Q
    ||||||||||| ||| |||||||||||||| || ||| ||| |||||||||||||||||    
T  41503524 aagaatgcacaaaataaaacacatattcataacaaataatcgaagttcattgctactaa 41503582  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 9488780 - 9488740
Alignment:
Q  298 ccaaaagttgcatcaaagggctccttcacaacctgcaatta 338  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  9488780 ccaaaagttgcaccaaagggctccttcacaacctacaatta 9488740  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 23202777 - 23202837
Alignment:
Q  293 tattaccaaaagttgcatcaaagggctccttcacaacctgcaattagaagaaactcaaatg 353  Q
    |||| |||||||||||| |||||||||| |||||||||| |||||| || ||| |||||||    
T  23202777 tattgccaaaagttgcaccaaagggctcgttcacaacctacaattaaaataaattcaaatg 23202837  T

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