View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_31 (Length: 413)
Name: NF3173_high_31
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 155 - 398
Target Start/End: Original strand, 4247302 - 4247536
Alignment:
| Q |
155 |
tttgaaggtccttagcttgagcttgatatcaaatcaccgatagtcttgttagctgcatattgtacataacattttgtttggggttgtctccaatggagaa |
254 |
Q |
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| T |
4247302 |
tttgaaggtccttagcttgagcttgatatcaaatcaccaatagtcttgttagctgcatattgtacataacattttgtttggggttgtctccaatggagaa |
4247401 |
T |
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| Q |
255 |
tttgtccaatcactttatcatgttcattttctatgcatattatatttgttgatgaaatgcaaatccttaatgccagtttttggtcgagcatctgtgtttc |
354 |
Q |
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| T |
4247402 |
tctgtccaatcactttatcatgttcattttctatgc-----atatttgttgatgaaatgcaaatccttaatgccagtttttggtcgagcatctgtgtt-- |
4247494 |
T |
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| Q |
355 |
gctcgctctttcaatgatttgatgccatattccttggatgtttt |
398 |
Q |
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| T |
4247495 |
--tcgctctttcaatgatttgatgccatattccttggatgtttt |
4247536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 4247166 - 4247263
Alignment:
| Q |
13 |
tgagatgagagagtgtatatgaaatatgaatgtcaaccttccattccaatacagagaggaataaacaaatcttattttaaaattggaattttatgtcaaa |
112 |
Q |
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| T |
4247166 |
tgagatgagagagtgtatatgaaatat-aatgtcaaccttgca-----atacagagaggaataaacaaatcttattttgaaattggaattttatgtcaaa |
4247259 |
T |
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