View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_35 (Length: 396)
Name: NF3173_high_35
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 54039214 - 54039392
Alignment:
| Q |
200 |
gcagaacctgtgccttaagcactgaagtttaagccattgaaacttaaattgatcatatggttctatagtttaaaatctcacattactttgttgtatgaat |
299 |
Q |
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| T |
54039214 |
gcagaacctctgccttaagcactgaagtttaagccattgaaacttaaattgatcatatggttctatagtttaaaatctcacattactttgttgtatgaat |
54039313 |
T |
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| Q |
300 |
ttgtgtttatcaaaataaagagagacacagacttatactatgtgatattttaatatgagagaatataaattcccatgtc |
378 |
Q |
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| T |
54039314 |
ttgtgtttatcaaaatacggagagacacagacttatactatgtgatattttaatatgagagaatataaattcacatgtc |
54039392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 378
Target Start/End: Original strand, 54039402 - 54039433
Alignment:
| Q |
347 |
ttttaatatgagagaatataaattcccatgtc |
378 |
Q |
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| T |
54039402 |
ttttaatatgagagaatataaattcccatgtc |
54039433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 41787998 - 41787816
Alignment:
| Q |
22 |
ctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagggtccagagttggactacgtggttttacctgatagatatagtctgttataac-nn |
120 |
Q |
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| T |
41787998 |
ctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagggtccagaggtggactacgtggttttacctgatagatatagtctgttataacttt |
41787899 |
T |
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| Q |
121 |
nnnnnnnaggtgtgacttctttctattgtgatttccatggtggttcatgaaatttaacacgtggttcgtcagtgaacgagcag |
203 |
Q |
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| T |
41787898 |
tttttttaggtgtgacttctttctattgttagttccatggtggttcatgaaatttaacacgtggttcgttagtggaggagcag |
41787816 |
T |
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