View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_37 (Length: 391)
Name: NF3173_high_37
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 86 - 373
Target Start/End: Original strand, 41337675 - 41337967
Alignment:
| Q |
86 |
tgtatgaagtgtctgcagtatattcttaagagcattgatatttttccacttttgagtgtgataaattaataaatgtaattttgatgaacaaaatctctaa |
185 |
Q |
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| T |
41337675 |
tgtatgaagtgtctacagtatattcttaagagcattgatatttttccacttttgagtgtgataaattaataaatgtaattttgatgaacaaaatctctaa |
41337774 |
T |
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| Q |
186 |
gtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgccctgttagacctgcagcta-----gatttcaa |
280 |
Q |
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| T |
41337775 |
gtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgccctgttagacctgtagctagatatgatttcaa |
41337874 |
T |
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| Q |
281 |
gactaataatctatataagttagcagatggattatttgtgttgcctctctcttcttttattatatttttcatgttttttaattctagtctgtg |
373 |
Q |
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| T |
41337875 |
gactaataatctatataagttagaagatggattatttgtgttgcctctctcttcttttattatatttttcatgttttttaattctagtctgtg |
41337967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 41337555 - 41337624
Alignment:
| Q |
19 |
atagcatcagtagaggtatttcactttaaaaccttcattgagacaattcttttatcaaagatgattctgt |
88 |
Q |
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| T |
41337555 |
atagcatcagtagaggtatttcactttaaaaccttcattgaaacaattcttttatcaaagatgattctgt |
41337624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 36136230 - 36136327
Alignment:
| Q |
157 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
254 |
Q |
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| T |
36136230 |
aatgtaattttgataaacaaaatctccaagcataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
36136327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 36136129 - 36136191
Alignment:
| Q |
86 |
tgtatgaagtgtctgcagtatattcttaagagcattgatatttttccacttttgagtgtgata |
148 |
Q |
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| T |
36136129 |
tgtatgaagtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgata |
36136191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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