View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_38 (Length: 391)
Name: NF3173_high_38
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 6181919 - 6182298
Alignment:
| Q |
1 |
gcaatgagttgcttggattgtattctgatctttgttaaagtcattgcttttgaaaagaattctgaactagtttcttgatcagctcatattggcattgcag |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6181919 |
gcaatgagttgcttggattgtattctgatatttgttaaagtcattgcttttgaaaataattctgaactagtttcttgatcagctcatattggctttgcag |
6182018 |
T |
|
| Q |
101 |
tgcttgaagcttcaccttctttaacttgtcatgaccaccttatgctttattaagagtatcccaaacaccttttgtggtttcttgataaactatcttttca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182019 |
tgcttgaagcttcaccttctttgacttgtcatgaccaccttatgctttattaagagtatcccaaacaccttttgtggtttcttgataaactatcttttca |
6182118 |
T |
|
| Q |
201 |
aagatattgggatcaacacttgaattaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcatcaccagcattat |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182119 |
aagatattgggatcaacacttgaatgaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcatcaccagcattat |
6182218 |
T |
|
| Q |
301 |
ctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182219 |
ctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
6182298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 6222094 - 6222473
Alignment:
| Q |
1 |
gcaatgagttgcttggattgtattctgatctttgttaaagtcattgcttttgaaaagaattctgaactagtttcttgatcagctcatattggcattgcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6222094 |
gcaatgagttgcttggattgtattctgatatttgttaaagtcattgcttttgaaaataattctgaactagtttcttgatcagctcatattggctttgcag |
6222193 |
T |
|
| Q |
101 |
tgcttgaagcttcaccttctttaacttgtcatgaccaccttatgctttattaagagtatcccaaacaccttttgtggtttcttgataaactatcttttca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222194 |
tgcttgaagcttcaccttctttgacttgtcatgaccaccttatgctttattaagagtatcccaaacaccttttgtggtttcttgataaactatcttttca |
6222293 |
T |
|
| Q |
201 |
aagatattgggatcaacacttgaattaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcatcaccagcattat |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222294 |
aagatattgggatcaacacttgaatgaattaggaacaagccttttccatccgtcttcttttgctctcaattggcagatctttgtgcatcaccagcattat |
6222393 |
T |
|
| Q |
301 |
ctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222394 |
ctggcaaatctagaacacatcttgaaatcattcacattcacgatttcaaacacatcttgaaatctgaatatgactttcat |
6222473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 44756088 - 44756041
Alignment:
| Q |
335 |
cattcacgatttcaaacacatcttgaaatctgaatatgactttcatct |
382 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |||||||||| |
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|
| T |
44756088 |
cattcacgatttcaaacacatcttggaatatgaatataactttcatct |
44756041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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