View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_4 (Length: 734)
Name: NF3173_high_4
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30848958 - 30849197
Alignment:
| Q |
1 |
attgtaatgattacgaatggtggagataagattatcaggaagctgagttccaggataaagttgagtaagattacgaagaacagaagcccaagcaagtttc |
100 |
Q |
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| T |
30848958 |
attgtaatgattacgaatggtggagataagattatcaggaagctgagttccagggtagagttgagtaagattacgaagaacagaagcccaagcaagtttc |
30849057 |
T |
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| Q |
101 |
ttagaagaaggaggagactcaggattgttagtattattaaggttgagtgtgtttttgaaagatgtgattgcatcagaaagattacgaccaagtttgtgaa |
200 |
Q |
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| T |
30849058 |
ttagaagaaggaggagactcaggattgttagtattattaaggttgagtgtgtttttgaaagatgtgattgcatcagaaagattacgaccaagtttgtgaa |
30849157 |
T |
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| Q |
201 |
acttgttcttgtgtatgagaatggaagagtctttggaagc |
240 |
Q |
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| T |
30849158 |
acttgttcttgtgtatgagaatggaagagtctttggaagc |
30849197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 268 - 524
Target Start/End: Original strand, 30849228 - 30849487
Alignment:
| Q |
268 |
ttctgatctgtggtgtgttttcatgaggacttgttgttgttcaactgtgtcttcatcagtgatggtggttgtggtgcgagttggccaacactctaaggct |
367 |
Q |
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| T |
30849228 |
ttctgatctgtggtgagttttcatgaggacttgttgttgttcaaccgtgtcttcatcagtcatggtggttgtggtgcgagttggccaacactctaaggct |
30849327 |
T |
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| Q |
368 |
gcagccattggaaatgtgaggtagagtgtgatg---atttgagggaagaaaggccaaaaggtggtgggtggtagtgtggggatgatactaatttcaatgt |
464 |
Q |
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| T |
30849328 |
gcagccattggaaatgtgaggtagagtgtggtggtgatttgagggaagaaaggccaaaaggtggtgggtggtagtgtggggatgatactaatttcaatgt |
30849427 |
T |
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| Q |
465 |
gttttgtgaggttagtactcacttcactggtcactagtaataaatgcctattgcaatatc |
524 |
Q |
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| T |
30849428 |
gttttgtgaggttagtactcacttcactggtcactagtaataaatgcctattgcaatatc |
30849487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 618 - 714
Target Start/End: Original strand, 30849564 - 30849660
Alignment:
| Q |
618 |
taggatgtttggagttcgaattcccaatccctacatatatttattagacaatgtttctacaaattgaactaaggtgctttgatgttattatggagga |
714 |
Q |
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| T |
30849564 |
taggatgtttggagttcgacctcccgatccctgcatatatttattagataatatctctacagattgaactaatctgctttaatgttattatggagga |
30849660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 26561473 - 26561534
Alignment:
| Q |
11 |
ttacgaatggtggagataagattatcaggaagctgagttccaggataaagttgagtaagatt |
72 |
Q |
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| T |
26561473 |
ttacgaatgttggacataagcttttcaggaagctggctaccaggataaagctgagtaagatt |
26561534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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