View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_41 (Length: 382)
Name: NF3173_high_41
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 14111596 - 14111950
Alignment:
| Q |
18 |
aaaatggaagtaaagttcatatctacatttttcattactttgctatttgctgtttcagcatttgctaatgttcatcccaggtcaccagaaggtaatgttc |
117 |
Q |
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| T |
14111596 |
aaaatggaagtaaagttcatatctacatttttcattactttgctatttgctgtttcagcatttgctaatgttcatctcaggtcaccagaaggtaatgttc |
14111695 |
T |
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| Q |
118 |
aactctaatcatgtttgaaagtttgagtctaatctacaaagtcagatctgttctatacaatatactcttattcatgtttctgaaagtgggtagtgtatct |
217 |
Q |
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| T |
14111696 |
aactctaatcatgtttgaaagtttgagtctaatctacaaagtcagatctgttctatacaatatactcttattcatgtttctgaaagtgggtagtgtatgt |
14111795 |
T |
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| Q |
218 |
attacctctgtagcacaaacacttcatattgaagacatgtcggtgtctgacattgacatgacaccctcacaaatatgattacatttaattaatttctttt |
317 |
Q |
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| T |
14111796 |
attacctctgtagcacgaacacttcatattgaggacatgttagtgtctgacattgacatgacaccgtcacaaatatgattacatttaattaatttctttt |
14111895 |
T |
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| Q |
318 |
ctcaaattactattgatttaaacatgtcactgt-agtgttgtgtttggtgttcat |
371 |
Q |
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| T |
14111896 |
ctcaaattactattggtttaaacatgtcactgtcagtgttgtgtttggtgttcat |
14111950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 14124668 - 14124765
Alignment:
| Q |
33 |
ttcatatctacatttttcattactttgctatttgctgtttcagcatttgctaatgttcatcccaggtcaccagaaggtaatgttcaactctaatcatg |
130 |
Q |
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| T |
14124668 |
ttcatatgtacacttttcatgactttgctatttgctgcttcagcatttgctaaggttcaccccaggtcaccagaaggtaatgctcaactataatcatg |
14124765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 14128558 - 14128655
Alignment:
| Q |
33 |
ttcatatctacatttttcattactttgctatttgctgtttcagcatttgctaatgttcatcccaggtcaccagaaggtaatgttcaactctaatcatg |
130 |
Q |
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| T |
14128558 |
ttcatatgtacacttttcatgactttgctctttgctgcttcagcatttgctaaggttcaccctaggtcgccagaaggtaatgctcacctataatcatg |
14128655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 6252501 - 6252541
Alignment:
| Q |
286 |
acaaatatgattacatttaattaatttcttttctcaaatta |
326 |
Q |
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| T |
6252501 |
acaaatgtgattacatttaattaaattattttctcaaatta |
6252541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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