View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_45 (Length: 365)
Name: NF3173_high_45
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42393713 - 42393366
Alignment:
| Q |
1 |
gatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42393713 |
gatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggt |
42393614 |
T |
|
| Q |
101 |
tgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393613 |
tgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccactt |
42393514 |
T |
|
| Q |
201 |
ctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacc |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393513 |
ctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacc |
42393414 |
T |
|
| Q |
301 |
cttccatttgggagaaaccgctagaatttgatccgacaaggttcttgg |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393413 |
cttccatttgggagaaaccgctagaatttgatccgacaaggttcttgg |
42393366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 42377161 - 42376814
Alignment:
| Q |
1 |
gatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggt |
100 |
Q |
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||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||| | ||||| |
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| T |
42377161 |
gatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttcaagaggagttagaaactgtggt |
42377062 |
T |
|
| Q |
101 |
tgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccactt |
200 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||| |
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| T |
42377061 |
tggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgtttacaccctgcacttccactt |
42376962 |
T |
|
| Q |
201 |
ctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacc |
300 |
Q |
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|| | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | ||||||||||||||||||||||||| |
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| T |
42376961 |
ttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacgtttgggctattcatagagacc |
42376862 |
T |
|
| Q |
301 |
cttccatttgggagaaaccgctagaatttgatccgacaaggttcttgg |
348 |
Q |
| |
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||| |||||||||| || |||||||||||||| ||||||||||||| |
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|
| T |
42376861 |
cttatgtttgggagaacccactagaatttgatcctacaaggttcttgg |
42376814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 42387509 - 42387228
Alignment:
| Q |
1 |
gatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggt |
100 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||| |||| ||| |||| |||| ||||||||||||||||||||||||| | ||| ||||| |
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| T |
42387509 |
gatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgaggaaggttcaagaggaactggaaatcgtggt |
42387411 |
T |
|
| Q |
101 |
tgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42387410 |
tgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccaacacttccactt |
42387311 |
T |
|
| Q |
201 |
ctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttg |
283 |
Q |
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|| | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||||||| |
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| T |
42387310 |
ttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacgtttg |
42387228 |
T |
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