View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_49 (Length: 348)
Name: NF3173_high_49
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_49 |
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| [»] scaffold0068 (4 HSPs) |
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Alignment Details
Target: scaffold0068 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 29965 - 29843
Alignment:
| Q |
201 |
cacaattgtattgaattctcacattgttgaatgtatttagaattgagatctaagaaatggatgcatgttttctaatccattgtgcaatgtattcacggta |
300 |
Q |
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| T |
29965 |
cacaattgtattgaattctcacattgtccaatgtatttagaatttgaatctaagaaatggatgcatcttttctaatccattgtgcaatgtattcacggga |
29866 |
T |
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| Q |
301 |
gatttctctttatggaccaagca |
323 |
Q |
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| T |
29865 |
gattttgctttatgaaccaagca |
29843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 30148 - 30042
Alignment:
| Q |
68 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcctacgtagttagagtttaaagcaagaaaacttgttgtggcaaata |
167 |
Q |
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| T |
30148 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaaata |
30049 |
T |
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| Q |
168 |
tgtgctg |
174 |
Q |
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| T |
30048 |
tatgctg |
30042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26988 - 26898
Alignment:
| Q |
5 |
tgtccaagaatatactattttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatca |
97 |
Q |
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| T |
26988 |
tgtccaactatatact-ttttacttgatttgt-tagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
26898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 26830 - 26753
Alignment:
| Q |
248 |
atctaagaaatggatgcatgttttctaatccattgtgcaatgtattcacggtagatttctctttatggaccaagcaattg |
327 |
Q |
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| T |
26830 |
atctaagaaatgtatgtatcttttctaatacattgtccaatgtattca--ggagattgctctttatgcaccaaacaattg |
26753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 21683762 - 21683868
Alignment:
| Q |
68 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcctacgtagttagagtttaaagcaagaaaacttgttgtggcaaata |
167 |
Q |
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| T |
21683762 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaaata |
21683861 |
T |
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| Q |
168 |
tgtgctg |
174 |
Q |
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| T |
21683862 |
tatgctg |
21683868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 21683945 - 21684067
Alignment:
| Q |
201 |
cacaattgtattgaattctcacattgttgaatgtatttagaattgagatctaagaaatggatgcatgttttctaatccattgtgcaatgtattcacggta |
300 |
Q |
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| T |
21683945 |
cacaattgtattgaattctcacattgtccaatgtatttagaatttgaatctaagaaatggatgcatcttttctaatccattgtgcaatgtattcacggga |
21684044 |
T |
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| Q |
301 |
gatttctctttatggaccaagca |
323 |
Q |
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| T |
21684045 |
gattttgctttatgaaccaagca |
21684067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 42727103 - 42727214
Alignment:
| Q |
5 |
tgtccaagaatatactattttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatcatggtagt |
104 |
Q |
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| T |
42727103 |
tgtccaactatatact-ttttacttgatttgt-tagtatgtgcatttgaaccactatagtttcactatatcaataatgtacgtaacttcatcatggtagt |
42727200 |
T |
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| Q |
105 |
gttaaaacctacta |
118 |
Q |
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|||||||||||||| |
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| T |
42727201 |
gttaaaacctacta |
42727214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 21686922 - 21687012
Alignment:
| Q |
5 |
tgtccaagaatatactattttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatca |
97 |
Q |
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| T |
21686922 |
tgtccaactatatact-ttttacttgatttgt-tagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
21687012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 21687080 - 21687157
Alignment:
| Q |
248 |
atctaagaaatggatgcatgttttctaatccattgtgcaatgtattcacggtagatttctctttatggaccaagcaattg |
327 |
Q |
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| T |
21687080 |
atctaagaaatgtatgtatcttttctaatacattgtccaatgtattca--ggagattgctctttatgcaccaaacaattg |
21687157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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