View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_5 (Length: 679)
Name: NF3173_high_5
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 228 - 657
Target Start/End: Complemental strand, 50440083 - 50439651
Alignment:
| Q |
228 |
tatcttttaaactataaaataacaacaattaccaaaaacttaagttgtctaagcgatttctataaattttattattctaagacatttgtctaagcgcttg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50440083 |
tatcttttaaactataaaataacaacaattaccaaaaacttaagttgtctaagcgatttctataaattttattattctaagacatttgtctaagcgcttg |
50439984 |
T |
|
| Q |
328 |
cagaagtatttgcaatagctaatgagaatagcttatg---tctttaagttggtttcatcttattgcaataatctctccagcataggttacaacttatacg |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50439983 |
cagaagtatttgcaatagctaatgagaatagcttatgatgtctttaagttggtttcatcttattgcaataatctctccagcataggttacaacttatacg |
50439884 |
T |
|
| Q |
425 |
aaaacagtttaaccatattcactattttactatagaaataacttatacatttaacacttatatgagaacatgtatttaataaaattttaattaatctgtt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50439883 |
aaaacagtttaaccatattcactattttactatagaaataacttatacatttaacacttatatgagaaaatgtatttaataaaattttaattaatctgtt |
50439784 |
T |
|
| Q |
525 |
tatccaagtacaccctagttgacacgatctcctcacaggttgaggtactgagctgcatacggcatccaaacatggttctcctcttaggagcctgtccgga |
624 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50439783 |
tatccaaatacaccctagttgacacgatctcctcacaggttgaggtactgagctgcatacggcatccaaacatggttctcctcttaggagcctgtccgga |
50439684 |
T |
|
| Q |
625 |
atatggatgtctagtgtatgagtacatgtcaaa |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50439683 |
atatggatgtctagtgtatgagtacatgtcaaa |
50439651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 50440228 - 50440153
Alignment:
| Q |
84 |
cttatcttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagtttctccaattaagta |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50440228 |
cttatcttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagtttctccaattaagta |
50440153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 43516646 - 43516570
Alignment:
| Q |
90 |
ttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagtttctccaattaagtaggagacc |
166 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| |||||||| ||||||||||||| || ||| |||||||||||| |
|
|
| T |
43516646 |
ttttatgtgcaaaaactaaatataaagaacttttcaaaaagtaattgagaggagtttttcaaatcaagtaggagacc |
43516570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 652
Target Start/End: Original strand, 1273758 - 1273850
Alignment:
| Q |
560 |
caggttgaggtactgagctgcatacggcatccaaacatggttctcctcttaggagcctgtccggaatatggatgtctagtgtatgagtacatg |
652 |
Q |
| |
|
|||||||||||| | || |||||| ||||||||||||||||||||||| ||||||||||||||||||| || || || || |||||| ||||| |
|
|
| T |
1273758 |
caggttgaggtattaagttgcataaggcatccaaacatggttctcctcctaggagcctgtccggaatacggctgccttgtttatgagcacatg |
1273850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 30563588 - 30563526
Alignment:
| Q |
84 |
cttatcttttatgtataaaaactagatatatgaaactttctaaaaagtagttgagaggagttt |
146 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
30563588 |
cttatcttttatgtataaaagttagatattaggaacttttcaaaaagtagttgagaggagttt |
30563526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 652
Target Start/End: Original strand, 42522525 - 42522598
Alignment:
| Q |
579 |
gcatacggcatccaaacatggttctcctcttaggagcctgtccggaatatggatgtctagtgtatgagtacatg |
652 |
Q |
| |
|
||||| |||||||| |||||||||||||| | ||||| |||||||| | ||| || || ||||||||| ||||| |
|
|
| T |
42522525 |
gcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcacatg |
42522598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 652
Target Start/End: Original strand, 42530733 - 42530806
Alignment:
| Q |
579 |
gcatacggcatccaaacatggttctcctcttaggagcctgtccggaatatggatgtctagtgtatgagtacatg |
652 |
Q |
| |
|
||||| |||||||| |||||||||||||| | ||||| |||||||| | ||| || || ||||||||| ||||| |
|
|
| T |
42530733 |
gcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcacatg |
42530806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University