View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_54 (Length: 338)
Name: NF3173_high_54
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_54 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 376522 - 376828
Alignment:
| Q |
14 |
agaggtagtggtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376522 |
agaggtagtggtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttg |
376621 |
T |
|
| Q |
114 |
acaattatgtgaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376622 |
acaattatgtgaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctct |
376721 |
T |
|
| Q |
214 |
tcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgta |
313 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376722 |
tcttcactctatttttaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgta |
376821 |
T |
|
| Q |
314 |
caacaac |
320 |
Q |
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||||||| |
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| T |
376822 |
caacaac |
376828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 320
Target Start/End: Complemental strand, 347964 - 347668
Alignment:
| Q |
24 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
123 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| | ||||||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| |
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| T |
347964 |
gtgagttcatgggaccttggtttaccaacatgaactatttggttactagtgaccctatgaacgtgcatcacatgatgagcaagtgttttgataattatgt |
347865 |
T |
|
| Q |
124 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
223 |
Q |
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| T |
347864 |
aaagggtcaagaatttcatgagatttttgaagcctttggagatggaatattcaacgctgattcggagaaatggaaatacaataggtctctttttcactct |
347765 |
T |
|
| Q |
224 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaac |
320 |
Q |
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| T |
347764 |
attttcaaacaaagagattttgaattgtttcaaaagaaaatcattcaaaacaagttggagagaagtttgattcctttgtttgaccatgtacaacaac |
347668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 24 - 320
Target Start/End: Complemental strand, 356623 - 356327
Alignment:
| Q |
24 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
123 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||| | |||||| ||||||||||||||| |
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| T |
356623 |
gtgagttcatgggaccttggtttaccagcatgaactatttggtcactagtgaccccatcaacttgcatcacatgttaagcaagtcttttgacaattatgt |
356524 |
T |
|
| Q |
124 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
223 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||| |
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| T |
356523 |
taagggtcatgaatatcatgagatatttgaagcctttggagatggaatattcaacactgattcggagacatggaaatacaataggtctctttttcactct |
356424 |
T |
|
| Q |
224 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaac |
320 |
Q |
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| T |
356423 |
attttgaaaataagagattttgaaatgtttcaaaagaaaatcattcaaaacaagttggagaaaagtttgattcctttgttggaccatgtacaacaac |
356327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 336917 - 337000
Alignment:
| Q |
193 |
atggaaatataataggtctcttcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaa |
276 |
Q |
| |
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||||||||| |||||| |||||| || | | | ||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
336917 |
atggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaatcattcacaacaa |
337000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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