View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_56 (Length: 330)
Name: NF3173_high_56
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 40000611 - 40000903
Alignment:
| Q |
29 |
gtcctttgaatttagtacattatgaatttggcaccaacaagttatgctcattttattgatgattttagtagatttgcgtggatttatcttctaaggcaaa |
128 |
Q |
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| T |
40000611 |
gtcctttgaatttagtacattatgaatttagctccaacaagttatgctcattttattgatgattttagtagatttgcgtggatttatcttctaaggcaaa |
40000710 |
T |
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| Q |
129 |
aactagtagatgtgtgtaacaacttagaagcttttattcaatttaaaatccttgtgaaaatcagttcaatgcaaaaattaaagcagtccagtgtggtagt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40000711 |
aactagtagatgtgtgtaacaacttagaagcttttattcaatttaaaatccttgtgaaaatcagttcaatgcaaaaattaaagcagtccagtgtggtagt |
40000810 |
T |
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| Q |
229 |
ggacaagaataatataaaaacggatacaaaaattaaatcaattatctcgctacaggcaagaatcgctctactactctcatacgacctttcatc |
321 |
Q |
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| T |
40000811 |
ggacaagaataatataaaaacagatacaaaaattaaatcaattatctcgctacaggcaagaatcgctctactactctcatacgacctttcatc |
40000903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40000544 - 40000598
Alignment:
| Q |
1 |
aaaattctcttacatgtgccaaaagacagtcctttgaatttagtacattatgaat |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40000544 |
aaaattctcttacatgtgccaaaagacagtcctttgaatttagtacattacgaat |
40000598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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