View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_57 (Length: 328)
Name: NF3173_high_57
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 16438040 - 16437719
Alignment:
| Q |
1 |
caataaaacaaataatatcaacttgacnnnnnnncattgaccaagctctgttcacagatagagtatttgcaactattcaaagcattgttgtcatatgtaa |
100 |
Q |
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| T |
16438040 |
caataaaacaaataatatcaacttgacaaaaatacattgaccaagctctgttcacagatagagtatttgcaactattcaaagcattgttgtcatatgtaa |
16437941 |
T |
|
| Q |
101 |
tatttctactcagcatttgcaactatttttgtctttccggaatgatattgtactgcaaaatcgtaatcatttatgaaattcatccatcttgtttgcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16437940 |
tatttctactcagcatttgcaactatttttgtcttttcggaatgatattgtactgcaaaattgtaatcatttatgaaattcatccatcttgtttgcctca |
16437841 |
T |
|
| Q |
201 |
tgcataactccttttggtcaaataagtacttcaaactca-gataccgaccgatgcaagtcgtaacttgtataactttcatgatttacctatacccttcca |
299 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16437840 |
tgcataactccttttggtcaaataagtactttaaactcaggataccgaccgatgcaagtcgtaacttgtataactttcatgatttacctatacccttcca |
16437741 |
T |
|
| Q |
300 |
acatgcaatcttttattctctg |
321 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
16437740 |
acatgcaatattttattctctg |
16437719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 49929200 - 49929077
Alignment:
| Q |
117 |
ttgcaactatttttgtctttccggaatgatattgtactgcaaaatcgtaatcatttatgaaattcatccatcttgtttgcctcatgcataactccttttg |
216 |
Q |
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|||||||||| |||| |||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| || |||||| ||||| |
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| T |
49929200 |
ttgcaactatatttgcctttaccagatgatattgtagtgcaaaatcataatcatttatgaaattcatccatcttctttgcctcgtgtttaactcattttg |
49929101 |
T |
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| Q |
217 |
gtcaaataagtacttcaaactcag |
240 |
Q |
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|||||| ||||||||| ||||||| |
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| T |
49929100 |
gtcaaacaagtacttccaactcag |
49929077 |
T |
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