View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_61 (Length: 318)

Name: NF3173_high_61
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_61
NF3173_high_61
[»] chr5 (1 HSPs)
chr5 (1-298)||(10971966-10972263)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 10971966 - 10972263
Alignment:
Q  1 aacataccgatgcaaagtggttaacatcgcgatgatgtgcttcatcagctctgacaacctctacaacatcccttaaagtagagttttggggaagctgcca 100  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10971966 aacataccgaagcaaaatggttaacatcgcgatgatgtgcttcatcagctctgacaacctctacaacatcccttaaagtagagttttggggaagctgcca 10972065  T
Q  101 atagtcaatagcaatagctggagcaggaacgttttcgatgttgcctttatcaagttccttgagaaactcagtgtatgagtgaatagcttcctcctcaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10972066 atagtcaatagcaatagctggagcaggaacgttttcgatgttgcctttatcaagttccttgagaaactcagtgtatgagtgaatagcttcctcctcaagg 10972165  T
Q  201 taaccaaccatacggtgtgcaaattttggtgagagcaaatagcctaagaaataagcattgaagaaaacaccttggacagttatgaccagagcacgttc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10972166 taaccaaccatacggtgtgcaaattttggtgagagcaaatagcctaagaaataagcattgaagaaaacaccttggacagttatgaccagagcacgttc 10972263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University