View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_62 (Length: 316)
Name: NF3173_high_62
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 31176099 - 31175804
Alignment:
| Q |
1 |
cacagatagatgtcaacttccactaaacaataagttgagtagaacagacgaacaaataaataactgaacatgcagacaatcaagtaagccaatatgcata |
100 |
Q |
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| T |
31176099 |
cacaaatagatgtcaacatccactaaacaataagttgagtagaacagacgaacaaataaataactgaacatgcagacaattaagtaagccaatatgcata |
31176000 |
T |
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| Q |
101 |
gaagttaggcatataaaaaatatacaacacataaacacgtatttaatgatagaagttacctccaaggaaaaagggaaaccacaccatagttacaaacgaa |
200 |
Q |
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| T |
31175999 |
gaagttaggcatataaaaa-tatacaatgca--aacacatatttaatgatagaagttacctccaaggaaaaagggaaaccacaccatagttacaaacgaa |
31175903 |
T |
|
| Q |
201 |
tactcataactgaatgagtgacacaggtacataaggctaaggattggaaacgatattgaaacacaaataccaactaaaccgacactataaatgagagac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175902 |
tactcataactgaatgagtgacacaggtacataaggctaaggattggaaacgatattgaaacacaaataccaactaaaccgacactataaatgagagac |
31175804 |
T |
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