View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_65 (Length: 311)
Name: NF3173_high_65
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_65 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 31935882 - 31935587
Alignment:
| Q |
16 |
cactggatgtggagaggatcttaaccggaggtgtccctcggagctgagtgtggacggtggtgacgcgtgtaatagcgcgtgtggtgcgtttgggacaccg |
115 |
Q |
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| T |
31935882 |
cactggatgtggagaggatcttaaccggaggtgtccctcggagctgagagtggacggtggtgacgcgtgtaatagcgcgtgtggcgcgtttgggacaccg |
31935783 |
T |
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| Q |
116 |
gagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaaatgtttaaatctacttgtcctaaatcttatagctatg |
215 |
Q |
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| T |
31935782 |
gagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaaatgtttaaatctgcttgtcctaaatcttatagctatg |
31935683 |
T |
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| Q |
216 |
cgtttgatgttgttaatagtacttttaattgtactgacgcggattattatactatctcattttgtcctttttctttttccaggtaaataaaacttt |
311 |
Q |
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| T |
31935682 |
cgtttgatgatgctacgagtacttttacttgtactgctgcggatgattatactatcacattttgtccttcttcttctccaaggtaaataaaacttt |
31935587 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 27975539 - 27975356
Alignment:
| Q |
79 |
cgcgtgtaatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaa |
178 |
Q |
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| T |
27975539 |
cgcgtgtaagagcgcgtgtgaggcttttggtagtcctgagtattgttgtagtggcgcgtatggttcaccggcgacttgtagaccgtcgatttactcggaa |
27975440 |
T |
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| Q |
179 |
atgtttaaatctacttgtcctaaatcttatagctatgcgtttgatgttgttaatagtacttttaattgtactgacgcggattat |
262 |
Q |
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| T |
27975439 |
atgtttaaaaatgcttgccctagatcgtatagctacgcttatgatgatgcttcgagtacttttacttgtactgctgcggattat |
27975356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 8810723 - 8810782
Alignment:
| Q |
80 |
gcgtgtaatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgttt |
139 |
Q |
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| T |
8810723 |
gcgtgtaatagtgcttgtggcgcgtttgggaaaccggaatattgttgtaacggcgcgttt |
8810782 |
T |
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