View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_69 (Length: 306)
Name: NF3173_high_69
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 42339660 - 42339393
Alignment:
| Q |
22 |
tctaccactagaaccttgacaaacctacaaacaaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaa |
121 |
Q |
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| T |
42339660 |
tctaccactagaaccttgacaaacctacaaacaaaagaaagtttcaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaa |
42339561 |
T |
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| Q |
122 |
gaggaaagactgttgaatcgacctctaccaccgcttcctcttccactgctcgatctaccaccatcaaagcatttcgatatagattgagccataagtaacg |
221 |
Q |
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| T |
42339560 |
gaggaaagactgttgaatcgacctctaccaccacttcctcttccactgctcgttctaccaccatcaaagcatttcaaattagattgagccataagtaacg |
42339461 |
T |
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| Q |
222 |
tctcttgttggtctttcaagcatttcttttctattaggacctcacgttggtagtaggctatacgactg |
289 |
Q |
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| T |
42339460 |
tctcttgttggtcttccaagcatttcttttctattaggacctcacgttggtagtaggttatacgactg |
42339393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 42339831 - 42339758
Alignment:
| Q |
54 |
aaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaa |
128 |
Q |
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| T |
42339831 |
aaaagaaaatttcaacataaaaaaacaaataggatgctatcagcaaaacagtagtacgac-agaaaaagaggaaa |
42339758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 42339875 - 42339836
Alignment:
| Q |
25 |
accactagaaccttgacaaacctacaaacaaaagaaaatt |
64 |
Q |
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| T |
42339875 |
accaccagaaccttgacaaaccgacaaacaaaagaaaatt |
42339836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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