View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_7 (Length: 650)
Name: NF3173_high_7
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 21 - 630
Target Start/End: Original strand, 53957318 - 53957927
Alignment:
| Q |
21 |
acactcattggattagacgtgtcccaccgacacatataattacactgaatcgtgtccggtgtctgtgtccgtattcgttcttcatagtctcaaaataatt |
120 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53957318 |
acactcattggattagacgtgtcccaccgacaaatataattacactgaatcgtgtccggtgtctgtgtccgtattcgtgcttcatagtctcaaaataatt |
53957417 |
T |
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| Q |
121 |
gtattaaataaaagtatgagttgaaataataaaaattactacatgttgcagctgcagcagtgagagttaggatatcactagcacttgtgccattcatggc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957418 |
gtattaaataaaagtatgagttgaaataataaaaattactacatgttgcagctgcagcagtgagagttaggatatcactagcacttgtgccattcatggc |
53957517 |
T |
|
| Q |
221 |
tgagccaataacacttctaagatcctctttcttagctcccattgattcagctacttttgcacactgagcagctaccaaagcagcagcagaggctattgct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957518 |
tgagccaataacacttctaagatcctctttcttagctcccattgattcagctacttttgcacactgagcagctaccaaagcagcagcagaggctattgct |
53957617 |
T |
|
| Q |
321 |
ttctctctatcttcatttgactcnnnnnnngaattttcagaagcaattgcagcaagtgctgctgcaactcctgcaatggacattgctgcatgcacatctg |
420 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53957618 |
ttctctctatcttcatttgactctttttttgaattttcagaagcaattgcagcaagtgctgctgcaactcctgcaatggacattgctgcatgcacctctg |
53957717 |
T |
|
| Q |
421 |
ctctttgcaatctttgttcttctttcttcttcagctttacttccttaaaccatctctttattgacatacttttcagtggtaatatctgcttccatggcat |
520 |
Q |
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| T |
53957718 |
ctctttgcaatctttgttcttctttcttcttcagctttacttccttaaaccatttctttattgacatacttttcagtggtaatatctgcttccatggcat |
53957817 |
T |
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| Q |
521 |
ctacatgatatatgatggtaaataagttatactaatttcaagtgaaataactagtaacgcttgcatgtaactctcaccatgaaactgaatgaaaaatatt |
620 |
Q |
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| T |
53957818 |
ctacatgatatatgatggtaaataatttatactaatttcaagtgaaataactagtaacgcttgcatgtaactctcaccatgaaactgagtgaaaaatatt |
53957917 |
T |
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| Q |
621 |
acgtacccat |
630 |
Q |
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|||||||||| |
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| T |
53957918 |
acgtacccat |
53957927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 7171483 - 7171446
Alignment:
| Q |
70 |
tcgtgtccggtgtctgtgtccgtattcgttcttcatag |
107 |
Q |
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| T |
7171483 |
tcgtgtccggtgtctgtgtccgtatccgtgcttcatag |
7171446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 34691782 - 34691833
Alignment:
| Q |
21 |
acactcattggattagacgtgtcc--caccgacacatataattacactgaat |
70 |
Q |
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|||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34691782 |
acactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34691833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 34714194 - 34714245
Alignment:
| Q |
21 |
acactcattggattagacgtgtcc--caccgacacatataattacactgaat |
70 |
Q |
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|||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34714194 |
acactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34714245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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