View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_high_70 (Length: 306)

Name: NF3173_high_70
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_high_70
NF3173_high_70
[»] chr1 (9 HSPs)
chr1 (153-284)||(16499281-16499412)
chr1 (187-288)||(16416567-16416668)
chr1 (187-288)||(16427486-16427587)
chr1 (167-290)||(16438158-16438283)
chr1 (188-284)||(16443084-16443180)
chr1 (178-290)||(16419744-16419856)
chr1 (1-138)||(16438027-16438157)
chr1 (201-288)||(16432841-16432922)
chr1 (1-39)||(16420002-16420040)
[»] chr8 (8 HSPs)
chr8 (218-267)||(2053869-2053918)
chr8 (218-283)||(10767261-10767326)
chr8 (224-267)||(2032628-2032671)
chr8 (218-264)||(2021933-2021979)
chr8 (218-263)||(1950865-1950910)
chr8 (218-263)||(2028086-2028131)
chr8 (218-263)||(2036677-2036722)
chr8 (218-263)||(2046054-2046099)
[»] chr2 (2 HSPs)
chr2 (218-262)||(28713715-28713759)
chr2 (218-262)||(28743615-28743659)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 284
Target Start/End: Original strand, 16499281 - 16499412
Alignment:
Q  153 tcactggtactacaagtgaaaagtaagagaaagccatggcagattcagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaagg 252  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  16499281 tcactagtactacaagtgaaaagtaagagaaaggcatggcagattcagaaagagtaaaagaactcaaagcttttgatgatacaaaacttggtgttaaagg 16499380  T
Q  253 acttgttgatgcagggattaccaagatccctc 284  Q
    |||||||||||||||||||||||| |||||||    
T  16499381 acttgttgatgcagggattaccaaaatccctc 16499412  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 16416668 - 16416567
Alignment:
Q  187 catggcagattcagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgt 286  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  16416668 catggaagatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgtcgatgcagggattacaaagatccctcgt 16416569  T
Q  287 at 288  Q
    ||    
T  16416568 at 16416567  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 16427587 - 16427486
Alignment:
Q  187 catggcagattcagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgt 286  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||    
T  16427587 catggaagatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttagaggacttgttgatgcagggattacaaaggtccctcgt 16427488  T
Q  287 at 288  Q
    ||    
T  16427487 at 16427486  T

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Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 16438158 - 16438283
Alignment:
Q  167 agtgaaaagtaagagaaa--gccatggcagattcagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgc 264  Q
    |||||||| ||||||| |  |||||| || ||||||||||| |||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  16438158 agtgaaaaataagagacaaggccatgacaaattcagaaagaataaaaacactaaaagcttttgatgaaacaaaattgggtgttaaaggacttgttgatgc 16438257  T
Q  265 agggattaccaagatccctcgtatgt 290  Q
    ||||||||||||||||||||||||||    
T  16438258 agggattaccaagatccctcgtatgt 16438283  T

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Target: chr1; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 16443180 - 16443084
Alignment:
Q  188 atggcagattcagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctc 284  Q
    |||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16443180 atggaagatttagaaagaataaaagaactaaaagattttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaaaatccctc 16443084  T

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Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 16419856 - 16419744
Alignment:
Q  178 agagaaagccatggcagattcagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaag 277  Q
    ||||||||| |||| ||||||||| ||||| |||  ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  16419856 agagaaagctatggaagattcagagagagtgaaaatactgaaagcttttgatgaaacaaaatttggtgtaaaaggacttgttgatgcagggattaccaag 16419757  T
Q  278 atccctcgtatgt 290  Q
    ||||||| |||||    
T  16419756 atccctcatatgt 16419744  T

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Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16438027 - 16438157
Alignment:
Q  1 tatttgttttattgctcgacctttgtgtcaaatttaatataatgttttatattaaaatgtgagtcttcctcacttaatttgttttattgctcaacctttg 100  Q
    |||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16438027 tatttgttttattgctcgacctttgtgtcaaattt------------tatattaaaatgtgagtcttcctcacttaatttgctttattgctcaacctttg 16438114  T
Q  101 -----atgaaacattcagtgtagaaaaagtccataaggctatt 138  Q
         |  |||||||||||||||||||||||||||||||||||    
T  16438115 tgtccaaaaaacattcagtgtagaaaaagtccataaggctatt 16438157  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 16432922 - 16432841
Alignment:
Q  201 aaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccctcgtat 288  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||      ||||||||||||| ||||||||||    
T  16432922 aaagagtaaaagaacttaaagcttttgatgaaaaaaaacttggtgttaaaggacttgt------agggattaccaaggtccctcgtat 16432841  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16420040 - 16420002
Alignment:
Q  1 tatttgttttattgctcgacctttgtgtcaaatttaata 39  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  16420040 tatttgttttattgctcgacctttgtgtcaaaattaata 16420002  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 2053869 - 2053918
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 267  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||||||    
T  2053869 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 2053918  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 10767261 - 10767326
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaagatccct 283  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||| |||  ||| ||||||||||    
T  10767261 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatggaggacttaacaagatccct 10767326  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 2032628 - 2032671
Alignment:
Q  224 tttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 267  Q
    |||||||||||||||  |||||| ||||||||||||||||||||    
T  2032628 tttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 2032671  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 2021933 - 2021979
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgc 264  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||||    
T  2021933 aaagcatttgatgaaacaaaagatggtgtcaaaggacttgttgatgc 2021979  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 1950910 - 1950865
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 263  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  1950910 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 1950865  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 2028086 - 2028131
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 263  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2028086 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 2028131  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 2036677 - 2036722
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 263  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2036677 aaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2036722  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 2046054 - 2046099
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 263  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2046054 aaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2046099  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 28713759 - 28713715
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgat 262  Q
    ||||| |||||||||||||||  |||||||||||| |||||||||    
T  28713759 aaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28713715  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 28743659 - 28743615
Alignment:
Q  218 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgat 262  Q
    ||||| |||||||||||||||  |||||||||||| |||||||||    
T  28743659 aaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28743615  T

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