View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_75 (Length: 294)
Name: NF3173_high_75
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_75 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 45731069 - 45731343
Alignment:
| Q |
19 |
tattcaacttctctttgcctaaaagaaacagttgccactagggattatgttcattacacaaaagaagtagtttcattgatatgat--tgtgtgtatatag |
116 |
Q |
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| T |
45731069 |
tattcaacttctctttccctaaaagaaatagttgccactagggattatgttcatcacacaaaagaaatagtttcattgatatgattgtgtgtgtatatag |
45731168 |
T |
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| Q |
117 |
gcacatatttttaaaataagtgacaatttaaacattgatttatatgacaaactatactagtaagcaaggtcatgtaaaatgagactctcaagagttcaca |
216 |
Q |
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| T |
45731169 |
gcacata-ttttaaaataagtgacattttaaacattgatttatatgacaaactatactagtaagcaaggtcatgtaaaatgagactct--tgagtccaca |
45731265 |
T |
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| Q |
217 |
tgtcttaactcaacaggtaaaatgtcgaagttgttaagttagacgtcatgaacgatgttcgaatcctgactcatctac |
294 |
Q |
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| T |
45731266 |
tatcttaactcaataggtaaaatgtcgaaattgttaggttagacgtcatgaacgaggtttgaatcctgactcatctac |
45731343 |
T |
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