View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_77 (Length: 282)
Name: NF3173_high_77
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_77 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 44139609 - 44139859
Alignment:
| Q |
20 |
ggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggt |
119 |
Q |
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| T |
44139609 |
ggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggt |
44139708 |
T |
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| Q |
120 |
atgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttagtgatgcttcagtggctgctttcctacaagaaatg |
219 |
Q |
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| T |
44139709 |
atgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttattgatgcttcagtggctgctttcctacaagaaatg |
44139808 |
T |
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| Q |
220 |
tctgagaacnnnnnnnnnaaccacaagaattgtgggtaatttgtatctgtg |
270 |
Q |
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| T |
44139809 |
tctgagaactttttttttaaccacaagaattgtgggtaatttgtatctgtg |
44139859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 40888379 - 40888629
Alignment:
| Q |
20 |
ggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888379 |
ggtgtttgcttcttgttatttgttttccagctgagtattgtctatcgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggt |
40888478 |
T |
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| Q |
120 |
atgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttagtgatgcttcagtggctgctttcctacaagaaatg |
219 |
Q |
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| T |
40888479 |
atgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttaatgatgcttcagtggctgctttcctacaagaaatg |
40888578 |
T |
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| Q |
220 |
tctgagaacnnnnnnnnnaaccacaagaattgtgggtaatttgtatctgtg |
270 |
Q |
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| T |
40888579 |
tctgagaactttttttttaaccacaagaattgtgggtaatttgtatctgtg |
40888629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 44152681 - 44152575
Alignment:
| Q |
20 |
ggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggt |
119 |
Q |
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||||||||||||||||||| | |||| ||||| |||||||| |||||||| |||||| || ||||||||||||| |||||| ||||| |||||| |
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| T |
44152681 |
ggtgtttgcttcttgttatatcttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgaggt |
44152582 |
T |
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| Q |
120 |
atgtaac |
126 |
Q |
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||||||| |
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| T |
44152581 |
atgtaac |
44152575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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