View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_78 (Length: 279)
Name: NF3173_high_78
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_78 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 50440568 - 50440290
Alignment:
| Q |
1 |
agagacttcatgcagagatgaaagcagttagagaagcagaagagnnnnnnnnngtaatggatgctttagtaaatgtagatgtcaggtatagaaagtatac |
100 |
Q |
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| T |
50440568 |
agagacttcatgcagagatgaaagcagttagagaagcagaagagaaaaaaaaagtaatggatgctttagtaaatgtagatgtcaggtatagaaagtatac |
50440469 |
T |
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| Q |
101 |
aattgaggaaattgaagctgcaacaaannnnnnnncacaatccctcaagattggagaaggaggatatggtccagtttttaagtgccttctggaccataca |
200 |
Q |
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| T |
50440468 |
aattgaggaaattgaagctgcaacaaattttttttcacaatccctcaagattggagaaggaggatatggtccagtttttaagtgccttctggaccataca |
50440369 |
T |
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| Q |
201 |
cctgttgcagtcaaggttctacgccccgatgcagcacaaggacgatcacagtttcaacgcgaggtaagcacacagacac |
279 |
Q |
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| T |
50440368 |
cctgttgcagtcaaggttctacgccccgatgcagcacaaggacgatcgcagtttcaacgcgaggtaagcacacagacac |
50440290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 270
Target Start/End: Original strand, 1273286 - 1273409
Alignment:
| Q |
147 |
aagattggagaaggaggatatggtccagtttttaagtgccttctggaccatacacctgttgcagtcaaggttctacgccccgatgcagcacaaggacgat |
246 |
Q |
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| T |
1273286 |
aagattggagaaggtggttatggtcccgtttataaatgtcttctagaccatactcctgtcgcagttaaagttctccgtcctgatgcacaacaaggaaggt |
1273385 |
T |
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| Q |
247 |
cacagtttcaacgcgaggtaagca |
270 |
Q |
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| T |
1273386 |
cccagtttcaacgagaggtaagca |
1273409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 1273216 - 1273260
Alignment:
| Q |
77 |
agatgtcaggtatagaaagtatacaattgaggaaattgaagctgc |
121 |
Q |
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| T |
1273216 |
agatgtgaggtatagaaggtatgcaattgaggagattgaagctgc |
1273260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 11747 - 11626
Alignment:
| Q |
149 |
gattggagaaggaggatatggtccagtttttaagtgccttctggaccatacacctgttgcagtcaaggttctacgccccgatgcagcacaaggacgatca |
248 |
Q |
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| T |
11747 |
gattggagaaggtggttatggtcctgtttatagatgtcttccagaccatactcccgttgcagttaaagttcttcatcctgatgcacaacaaggaagctca |
11648 |
T |
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| Q |
249 |
cagtttcaacgcgaggtaagca |
270 |
Q |
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| T |
11647 |
cagtttcaacgagaggtaagca |
11626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 21001395 - 21001433
Alignment:
| Q |
139 |
aatccctcaagattggagaaggaggatatggtccagttt |
177 |
Q |
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| T |
21001395 |
aatccttcaagattggagaaggaggatttggtccagttt |
21001433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 21009972 - 21009934
Alignment:
| Q |
139 |
aatccctcaagattggagaaggaggatatggtccagttt |
177 |
Q |
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| T |
21009972 |
aatccttcaagattggagaaggaggatttggtccagttt |
21009934 |
T |
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