View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_high_82 (Length: 268)
Name: NF3173_high_82
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_82 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 5165726 - 5165500
Alignment:
| Q |
6 |
aaaaattaatgaactattttaatttgtagtataagtttattaaagaaattttatatataaggaccaacgtagtaccttcgttgccaatccaaccttgaaa |
105 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5165726 |
aaaaattaaagaacttttttaatttgta---taagtttaataaagaaattttatatataagggccaacgtagtaccttcattgccaatccaaccttgaaa |
5165630 |
T |
|
| Q |
106 |
atagttgttggacaagtcgaggaggtgtagctcttcaaatggatggaacaatgaaacatttaacatcttagaatgaggggtctcaaatagtaacaagtaa |
205 |
Q |
| |
|
|||| | ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5165629 |
ggagttataggacaagtcaaggaggcgtagctcttcaaatggacggaacaatgaaacatttaacatcttagaatcaggggtctcaaatagtaacaagtaa |
5165530 |
T |
|
| Q |
206 |
agggataattcagttatgtgaccagaagag |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5165529 |
agggataattcagttatgtgaccagaagag |
5165500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 4846224 - 4846471
Alignment:
| Q |
1 |
aaataaaaaattaatgaactattttaatttgtagtataagtttattaaagaaattttatatataaggaccaacgtagtaccttcgttgccaatccaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
4846224 |
aaataaaaaattaatgaactattttaatttgtagtataagtttattaaagaaattttatatataaggaccaacatagtaccttcgttgccaatccagcct |
4846323 |
T |
|
| Q |
101 |
tgaaaatagttgttggacaagtcgaggaggtgtagctcttcaaatggatggaacaatgaaacatttaacatcttagaatgaggggtctcaaatagtaaca |
200 |
Q |
| |
|
|||| || ||||| |||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||| || || |||| |||||||||| |
|
|
| T |
4846324 |
tgaatatcgttgtcggacaagtcgaggaggcgtagctctttaaatggacagaacagtgaaacatttaacatcttaggatcagaggtccaaaatagtaacc |
4846423 |
T |
|
| Q |
201 |
agtaaagggataattcagttatgtgaccagaagagcacttgactctat |
248 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4846424 |
gatcaaagaataattcagttatgtgaccagaagagcactcgactctat |
4846471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 5193046 - 5192886
Alignment:
| Q |
6 |
aaaaattaatgaactattttaatttgtagtataagtttattaaagaaattttatatataaggaccaacgtagtaccttcgttgccaatccaaccttgaaa |
105 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5193046 |
aaaaattaatgaacttttttaatttgta---taagtttattaaagaaattttatatataaggacgaacgtagtaccttcgttgccaatccagcctagaaa |
5192950 |
T |
|
| Q |
106 |
atagttgttggacaagtcgaggaggtgtagctcttcaaatggatggaacaatgaaacatttaac |
169 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||| |||| | ||||||||||||| |
|
|
| T |
5192949 |
ggagttgtaggacaagtcgaggagccgtagctctttaaatggacggaatagtgaaacatttaac |
5192886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 5178856 - 5178663
Alignment:
| Q |
59 |
tatataaggaccaacgtagtaccttcgttgccaatccaaccttgaaaatagttgttggacaagtcgaggaggtgtagctcttcaaatggatggaacaatg |
158 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||| || ||| ||||||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
5178856 |
tatataaggaccaaagtagtaccttcgttgtcaatccaaccttgaatattgttcttggacaagtcgaggagacgtaactcttcaaatggacggaacaatg |
5178757 |
T |
|
| Q |
159 |
aaacatttaacatcttagaatgaggggtctcaaatagtaacaagtaaagggataattcagttatgtgaccagaagagcacttgactctattcca |
252 |
Q |
| |
|
||||||||||||| |||| || |||| | | ||||||| || | |||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
5178756 |
aaacatttaacatattaggatcagggaacaaatatagtaaactatagatggataattcaactatgtgaccaaaagagcacttgactctattcca |
5178663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 5141513 - 5141320
Alignment:
| Q |
59 |
tatataaggaccaacgtagtaccttcgttgccaatccaaccttgaaaatagttgttggacaagtcgaggaggtgtagctcttcaaatggatggaacaatg |
158 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| ||||||| || |||| ||| |||| ||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
5141513 |
tatatagggaccaaagtagtaccttcgttgccaatccagccttgaatatggttggaggataagttgaggaggcgtagctcttcaaacggacggaacaatg |
5141414 |
T |
|
| Q |
159 |
aaacatttaacatcttagaatgaggggtctcaaatagtaacaagtaaagggataattcagttatgtgaccagaagagcacttgactctattcca |
252 |
Q |
| |
|
||||||||||||| ||| || |||| ||| || ||| || | |||||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
5141413 |
aaacatttaacataataggatcagggaaatcatttattaaactatagatggataattcaactatttgaccagaaaagcacttgactctattcca |
5141320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 5205697 - 5205538
Alignment:
| Q |
75 |
tagtaccttcgttgccaatccaaccttgaaaatagttgttggacaagtcgaggaggtgtagctcttcaaatggatggaacaatgaaacatttaacatctt |
174 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||| |||||| ||||| || ||| ||||||||||||| |||||| ||||| ||||||||| || |
|
|
| T |
5205697 |
tagtacctttgttgccaatccaacctcgaaacccgttcaaggacaaatcgagaagacgtaactcttcaaatggacggaacagtgaaatatttaacatatt |
5205598 |
T |
|
| Q |
175 |
agaatgaggggtctcaaatagtaacaagtaaagggataattcagttatgtgaccagaaga |
234 |
Q |
| |
|
| |||||||||| |||||||||| | || ||||| || |||||||||||||||||| |
|
|
| T |
5205597 |
tggatgaggggtcgcaaatagtaatccttgaatggatagtttagttatgtgaccagaaga |
5205538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 7125372 - 7125295
Alignment:
| Q |
74 |
gtagtaccttcgttgccaatccaaccttgaaaatagttgttggacaagtcgaggaggtgtagctcttcaaatggatgg |
151 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| |||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
7125372 |
gtagtacctccgttgccaatcaagtcttgaaaattgttggaggacaagtcgaggaagtgtaactcttcaaatggatgg |
7125295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 5165814 - 5165765
Alignment:
| Q |
6 |
aaaaattaatgaactattttaatttgtagtataagtttattaaagaaatttta |
58 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5165814 |
aaaaattaatgaacttttttaattt---gtataagtttaataaagaaatttta |
5165765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University